Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01215 ATGTCTTCAGTTTCCTCCAAACGCAGATTCAGATCTCCTGCTTCACCTACTCCGGCCGCCGCTTCTCCGCCCTGCCGGAAATCCCCTCGCCACTGCATCGCTGCATCTCCCAATTCTGTACCGTCTGTAGCTCGCAAACTCATCACCGATGAGAATCTAATCGAGTCAGCAGTGAAATCCAAATGGAATCCCAAAGATGGAGAGCAATTGAGGATTGTGAAGGAGGTGTTACACTTGTCTACTGCACCGTCCACCATAGTGTGTCGTGAGGAGGAGCAAGATGTGGTGTTAGGGTTTTGTAAAGGTTCCGTTGAGCATGAAAAGGCTGGGAGTCTTTATATATGTGGGTGTCCTGGAACTGGAAAATCGTTATCTATGGAGAAAGTTAAAGTGAATTTACTTAATTGGGCTACACAGGCAGGATTGCCACTGCCGGATGTTTTATCTGTAAATTGTACATCTCTGTCAAACACATCTGATATTTTTGCAAAGATACTTGGGTTACACAAAACCCTTGGGAAGAAGGGTTCAGGCACAGCCTTGCAGCAACTTCAGAATATGTATTCTCATAAATCGCAGACAAAGAACATGATATTGATAGTAGTGGATGAATTAGATTATCTTATAACCAAAGACAGAGCTGTGCTCCATGATCTTTTCATGCTTACCACTTTCCCGTTTTCCAGATGTATACTGATAGGTGTAGCTAATGCAATTGATCTAGCAGATCGATTTCTTCCAAGGCTTACTGCATTAAATTGCAAGCCTACTGTTGTAACTTTTCGAGCATACACAAAAGATCAGATCCTTCAGATTCTGAAAGAAAGGCTAAATGAACTTCCTTACACTGTCTTCCAACAACAAGCATTAGAACTATGTGCCAGGAAAGTTGCTGCTGCTTCTGGAGATATGCGAAATGCTCTTTCCATATGCAGGAGTGCAATTGAGATGTTAGAAGCAGAAATTAGAGATTCTTCTTCCAATTTGAATGCCTTAGAAGAGAAATCATCTTCAGAACAAAATCTTCCTACATCTCTGGATGATATAAAAAAACATGAACTTGATATGGTAAGGATTGATCATATGGCTCTTGCCTTGTCCAAAACATATAGATCACCAGTGGTGGATACAATACAATCTCTGCCGCATCATCAACAGATTATACTCTGCTCTACAATGAAACATTTCCGTGGAGCCAAGAAAGACTCAATCCTTGGCGAGTTATATAAATCTTATGCGGCGATATGCAAATCATCACTAATTCCCCCAGCTGGAATTATGGAATTTTCAAACATGTGCAGAGTGTTAAATGACCAGGGCCTTATAAAACTAGGACAATCCCGGGATGATAAATTGAGAAGAGTGACACCTAAAGTAGATGAAGGCGATATTACTTTTGCATTGCAGGGAATCCGCTTTTTTCGAAATTGTCTTCAATGA 1440 0.4125 MSSVSSKRRFRSPASPTPAAASPPCRKSPRHCIAASPNSVPSVARKLITDENLIESAVKSKWNPKDGEQLRIVKEVLHLSTAPSTIVCREEEQDVVLGFCKGSVEHEKAGSLYICGCPGTGKSLSMEKVKVNLLNWATQAGLPLPDVLSVNCTSLSNTSDIFAKILGLHKTLGKKGSGTALQQLQNMYSHKSQTKNMILIVVDELDYLITKDRAVLHDLFMLTTFPFSRCILIGVANAIDLADRFLPRLTALNCKPTVVTFRAYTKDQILQILKERLNELPYTVFQQQALELCARKVAAASGDMRNALSICRSAIEMLEAEIRDSSSNLNALEEKSSSEQNLPTSLDDIKKHELDMVRIDHMALALSKTYRSPVVDTIQSLPHHQQIILCSTMKHFRGAKKDSILGELYKSYAAICKSSLIPPAGIMEFSNMCRVLNDQGLIKLGQSRDDKLRRVTPKVDEGDITFALQGIRFFRNCLQ 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01215 479 FunFam Cell division control protein 381 471 - -
Vifa2g01215 479 Pfam AAA lid domain 286 320 IPR041083 -
Vifa2g01215 479 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 42 477 - -
Vifa2g01215 479 Coils Coil 315 335 - -
Vifa2g01215 479 Pfam CDC6, C terminal winged helix domain 389 467 IPR015163 -
Vifa2g01215 479 SUPERFAMILY "Winged helix" DNA-binding domain 374 477 IPR036390 -
Vifa2g01215 479 Gene3D - 257 331 - -
Vifa2g01215 479 Pfam AAA domain 107 224 IPR003593 GO:0016887
Vifa2g01215 479 CDD AAA 92 250 - -
Vifa2g01215 479 Gene3D - 374 464 IPR036388 -
Vifa2g01215 479 CDD Cdc6_C 382 464 IPR015163 -
Vifa2g01215 479 SMART Cdc6_C_2 389 468 IPR015163 -
Vifa2g01215 479 FunFam Cell division control protein 253 378 - -
Vifa2g01215 479 Gene3D - 66 256 IPR027417 -
Vifa2g01215 479 PIRSF Cdc6 3 479 IPR016314 GO:0006270|GO:0051301
Vifa2g01215 479 MobiDBLite consensus disorder prediction 1 30 - -
Vifa2g01215 479 FunFam Cell division control protein 67 252 - -
Vifa2g01215 479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 323 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01215 Vifa-Chr2 330226065 330229464 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01215 16 478 Core DNA Replication Machinery Family AT2G29680 59.874 0.0 559
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01215 K02213 - gmx:100791200 724.546