Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01204 ATGGCATCCATTGCTACTTTCTTCAACAAGTTTTGCTATCTTTTCATCCTCATTCTCCACCTTGGCTGCTTCATGTTCACCACCGCCGCCGTCACCGCCGGAAAACAAAAACACGACACCCGTCATTTGCTACCCTCCAAGAAACGAAAAATCTTACCTTTATCACAACCCACTTCACCTTCCCACCCTAAATTCAAAACCCATAAAGCCCTTTCTTCTTCTTGGCATTTCGTCAAACACCTCTTCTCCGCTAAATCCTGCAAAACAGCCATCACCGCCGCCACCACACAAGCATCACCTCAATCCACATCAACCACCGCGGAAGCCTCCCAACAATCTCTCATCTCACTGGTTCAATCCGACCCGAGTTTCACCGATCCCCCACGCAAGAAACAACCCGAATCAGACATCTCCGCCGACAACTTCCCCCTCCGTAACGACATCTTCCCATGCACCGTCTGCGGCGAGATTTTCCAGAAACCAAATCTCCTCGAGAATCACCAATTCACAAACCACGCCGTGTCGGAACTCACCGGATCCGACCCGGGTCACAACATAGTCCAGATCATATTCAAATCGGGTTGGCCTGAAACAAACGAGTTTCCATTTCCAACAATTCACCGAATCCTAAAGATCCACAACAGCCAGAAAATCCTCTCCAAATTCGAAGAGTATCGCGAAACGGTAAAATCCAAAGCCACGCGTAACACGCGCCGCCGCGACGAACGCTGCATCGCCGACGGAAACGAACTTATGCGTTTTCACTGCTCCACTTTTTTATGCGAGTTAGGACACAACGGGGATTCTTCAATTTGTTCTCAGCAATTTTGTACTATCTGCGGAATTATTAAATCAGGATTTTCACAAAAATTAGACGGAATTTCCACGCTGTCAACAAGCTGGAGGGCAAACATGTCAATTCCTGATGACATCGAACGTGAATTTCGCTTCATGAACGTGAAACGGGCCATGCTTGTTTGTCGGGTTATTGCGGGTCGGGTTGGGTCTGATTCGGATGATGAAATGGATAAAACGGATGGGGGTTTTGATTCGGTGATGGCGCGCGGAGAGAGTGAGTTGGTGGTTTTTAATCCTAGGGCTGTGCTACCTTGTTTTGTGATTGTGTATAGTGTGTGA 1137 0.4793 MASIATFFNKFCYLFILILHLGCFMFTTAAVTAGKQKHDTRHLLPSKKRKILPLSQPTSPSHPKFKTHKALSSSWHFVKHLFSAKSCKTAITAATTQASPQSTSTTAEASQQSLISLVQSDPSFTDPPRKKQPESDISADNFPLRNDIFPCTVCGEIFQKPNLLENHQFTNHAVSELTGSDPGHNIVQIIFKSGWPETNEFPFPTIHRILKIHNSQKILSKFEEYRETVKSKATRNTRRRDERCIADGNELMRFHCSTFLCELGHNGDSSICSQQFCTICGIIKSGFSQKLDGISTLSTSWRANMSIPDDIEREFRFMNVKRAMLVCRVIAGRVGSDSDDEMDKTDGGFDSVMARGESELVVFNPRAVLPCFVIVYSV 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01204 378 MobiDBLite consensus disorder prediction 119 141 - -
Vifa2g01204 378 Gene3D - 174 377 - -
Vifa2g01204 378 ProSitePatterns Zinc finger C2H2 type domain signature. 151 172 IPR013087 -
Vifa2g01204 378 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 74 376 - -
Vifa2g01204 378 ProSiteProfiles Zinc finger C2H2 type domain profile. 149 177 IPR013087 -
Vifa2g01204 378 SUPERFAMILY ADP-ribosylation 175 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01204 Vifa-Chr2 326097234 326098370 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01204 75 378 C2H2 Transcription Factor Family AT2G29660 52.308 3.56e-106 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa2g01204 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01204 - - gmx:100785244 543.117