Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01195 ATGAAAAAAATTGGATCACATTTTGGTGTTGGTGATGATATTAAAATGAGCAACCACTCTTCTATAGGTCCTCCTTTGACTGCCATTGATAGATTTTTATGTGGTCAACGAAGCCATTTCCCTCAAAACATTGATGATGAAAACTATTGTAGCTTTGGTGCTTCACCCTTTAGTTATGTGTGGCCTAATAATAATATGGTGACTCAGGAAACTAGCTTTGTTGATCATCTAATGGGAGATGAAGAGGTCATGAATTGGACACAACCAATTCCTTCATTGTATGTGGAGAAAGAAGATCTGGTCAATGGATTAGGGAAGGGTGCGGCAAAAGTGATGGGAAAAAGACCTAAGAAAGTGTCTTCTCTTTCTTTGATCAAAGGACAGTGGAGTGATGAAGAAGACAGGAAATTGTTGAAGTTGGTGAAGCTACATGGTGTAAAAAAATGGTCAGAGATAGCTGAGAAGTTGGAAGGAAGAGCTGGAAAGCAGTGTAGGGAGAGATGGCAAAATCATCTTAGGCCTGATATTAAAAAAGATAGTTGGAGCGAGGAAGAAGAGAAGATACTAGTAGAATGTCATGGCAAGATGGGAAATCGTTGGGCTGAGATCGCGAAGAAAATTCCAGGAAGAACTGAAAATGCAATCAAGAATCATTGGAATGCAACTAAAAGAAGACAAAATTCAAAGAGAAAGAACAAAAGGCCTCAAACCAAAGATGGTAAACCACAATCCTCTATTCTTCAAGACTATATCAAATCTTTGTCTCAAAAATCATCCACAACCAATACTATTACTAGCTCCACTTCAGCTATCTCTGAGGACCCTTCCATTGACGAATCTCACCTTGTTTTTTCCAACATGTTTCACGAAAATTTATCATCATCATCACTCATAGCTGAGTCTTACGATGATGAACTTCTCTTCATGCAACAACTTTTCAAGGTGAATAATAATGTTGAACCTGTGCTTAACCAATACTATAAGAACCAGTCTACTAAAAATCAGATTCTCTCTGATGTTTCACCTTACAACATGTATCCTTACATTTCTCCAATGCTGAATGGAATTCAAAACGAGAATAATATAGAGTTGCAGCTTGGAAACATGAATCTTTCAGATGGAATGTTGGAGATCGTTTCTTCTGCTCAGTTTTTCTAA 1158 0.3756 MKKIGSHFGVGDDIKMSNHSSIGPPLTAIDRFLCGQRSHFPQNIDDENYCSFGASPFSYVWPNNNMVTQETSFVDHLMGDEEVMNWTQPIPSLYVEKEDLVNGLGKGAAKVMGKRPKKVSSLSLIKGQWSDEEDRKLLKLVKLHGVKKWSEIAEKLEGRAGKQCRERWQNHLRPDIKKDSWSEEEEKILVECHGKMGNRWAEIAKKIPGRTENAIKNHWNATKRRQNSKRKNKRPQTKDGKPQSSILQDYIKSLSQKSSTTNTITSSTSAISEDPSIDESHLVFSNMFHENLSSSSLIAESYDDELLFMQQLFKVNNNVEPVLNQYYKNQSTKNQILSDVSPYNMYPYISPMLNGIQNENNIELQLGNMNLSDGMLEIVSSAQFF 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01195 385 MobiDBLite consensus disorder prediction 211 245 - -
Vifa2g01195 385 PANTHER MYB PROTEIN-RELATED 108 245 - -
Vifa2g01195 385 SMART sant 177 225 IPR001005 -
Vifa2g01195 385 SMART sant 125 174 IPR001005 -
Vifa2g01195 385 MobiDBLite consensus disorder prediction 222 236 - -
Vifa2g01195 385 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 177 227 IPR017930 -
Vifa2g01195 385 Pfam Myb-like DNA-binding domain 129 187 - -
Vifa2g01195 385 ProSiteProfiles Myb-like domain profile. 173 223 IPR001005 -
Vifa2g01195 385 Gene3D - 125 177 - -
Vifa2g01195 385 Gene3D - 179 253 - -
Vifa2g01195 385 CDD SANT 180 223 IPR001005 -
Vifa2g01195 385 ProSiteProfiles Myb-like domain profile. 121 172 IPR001005 -
Vifa2g01195 385 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 123 176 IPR017930 -
Vifa2g01195 385 FunFam Transcriptional activator Myb isoform A 125 178 - -
Vifa2g01195 385 SUPERFAMILY Homeodomain-like 123 219 IPR009057 -
Vifa2g01195 385 CDD SANT 129 172 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01195 Vifa-Chr2 323614383 323616193 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01195 23 314 MYB Transcription Factor Family AT5G11050 44.771 9.27e-73 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa2g01195 Myb_DNA-bind_6 2.7e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01195 K09422 - gmx:100786295 354.755