Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01190 ATGAAGTGTGAAATGGGAATTCTTTCTCATGCACCATTTGTTGAAAACAATTGGTTTATGGAAGATAGAAGTAACATTAACAGGAGAGCAACAAAATGGACTGCATCAGAGAACAAGTTGTTTGAAAATGCTCTTGCTGTTTATGATAAAGATACGCCGGATCGGTGGGCTAAGGTAGCTGAAATGATACCTGGAAAATCTGTTGTTGATGTGATGAATCAGTATAAGGAATTGGAAGTTGATGTTTGTAATATTGAAGCTGGTTTAGTTCCAATTCCTGGTTATAGTACTATTACTAGTACTACTACTGCCTCACCTTTTACCTTGGATTGGGTTAGTTCTTCTGGTTATGATGCTTTTAGAGGAATCAATTCTAAGAGAAGTGGTTCCGGTAGATCGATCGATCAGGAGAGGAAGAAAGGCGTGCCATGGACCGAAGAAGAACACAAGTTATTTCTATTGGGTCTGAAAAAGTATGGAAAAGGTGATTGGAGAAACATATCAAGAAACTTTGTGATCACAAGAACACCAACACAAGTTGCTAGCCATGCTCAAAAATATTTCATCCGACAACTTTCCGGCGGCAAAGACAAAAGAAGAGCTAGCATCCATGACATAACAACGGTTAACCTCACCGAAACTTCAAAAGCTTCTCCAACTTCAGAAAACACCAAAACATCCACTTCACCAAACCATAACCATTCCATGAACATCATCAACAAATATTCCACCGCCGCATCCGAGATGCATTTTCAGCCGACTATGATGATGACGGCTTTCGACCCCTCACATGAACAAGTTTTCATGTCTCATAATAACTCTTATGGATTTAAAATGCAAGGTCAAAATCAAAATATGCATAGAAATACTCTTCATGAGTCTTCTTACTTTGGAACTCAAACACAAAACATGGTCTTCCAAATGCAATCTTCTCAACAAAACTATTCACATGCATGA 957 0.3845 MKCEMGILSHAPFVENNWFMEDRSNINRRATKWTASENKLFENALAVYDKDTPDRWAKVAEMIPGKSVVDVMNQYKELEVDVCNIEAGLVPIPGYSTITSTTTASPFTLDWVSSSGYDAFRGINSKRSGSGRSIDQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETSKASPTSENTKTSTSPNHNHSMNIINKYSTAASEMHFQPTMMMTAFDPSHEQVFMSHNNSYGFKMQGQNQNMHRNTLHESSYFGTQTQNMVFQMQSSQQNYSHA 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01190 318 MobiDBLite consensus disorder prediction 213 236 - -
Vifa2g01190 318 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 28 297 IPR043363 -
Vifa2g01190 318 SUPERFAMILY Homeodomain-like 26 79 IPR009057 -
Vifa2g01190 318 SUPERFAMILY Homeodomain-like 138 191 IPR009057 -
Vifa2g01190 318 Pfam Myb-like DNA-binding domain 143 188 IPR001005 -
Vifa2g01190 318 Pfam Myb-like DNA-binding domain 32 77 IPR001005 -
Vifa2g01190 318 NCBIfam myb-like DNA-binding domain, SHAQKYF class 139 191 IPR006447 GO:0003677
Vifa2g01190 318 ProSiteProfiles Myb-like domain profile. 136 188 IPR001005 -
Vifa2g01190 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 136 192 IPR017930 -
Vifa2g01190 318 Gene3D - 142 192 - -
Vifa2g01190 318 ProSiteProfiles SANT domain profile. 144 192 IPR017884 -
Vifa2g01190 318 CDD SANT 143 188 IPR001005 -
Vifa2g01190 318 Gene3D - 25 92 - -
Vifa2g01190 318 CDD SANT 32 78 IPR001005 -
Vifa2g01190 318 SMART sant 29 81 IPR001005 -
Vifa2g01190 318 SMART sant 140 190 IPR001005 -
Vifa2g01190 318 FunFam Transcription factor SRM1 25 92 - -
Vifa2g01190 318 FunFam transcription factor MYB1R1 142 193 - -
Vifa2g01190 318 ProSiteProfiles Myb-like domain profile. 25 79 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01190 Vifa-Chr2 321742065 321743420 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa2g01190 Myb_DNA-binding 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01190 - - cam:101514273 444.121