Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01184 ATGGCCAAGAAGGGTTGGTTTAGCATGGTAGAGAGAATCTTCACACATTCCACTCAAGAGAAGAAGGAGAAAAGAAGAAAATGGATATTTGGGAGGCTAAAGAACAAGAGATTTCCTTTAATTGAAGCACTGCCGCCATTAGGAGAAACACGGTTAAGTGAAGCAGAAGAAGAACACAACAGGCATGCTTTAACAGTAGCTATTGCTTCAGCTGAAGCTGCTCTAAATGCTGCTCAGGTTGCAGTTGAGGTTGTTAAGTTCCAATCTGTTCATCAATGTAAAGGTAAACTAAGAGAAGTTAATCACGATGCTTCTATATCCACACACAAATGCAAGAAGAAGATTGAAGAATCTGCAGCCCTCAAAATTCAAACAACATTTAGAGGTTACCTTGCAAGGAAAGCTTTGAGGGCATTGAAGGGAATTGTGAAGCTTCAAGCTATCATTCGTGGAAGAGCTGTAAGACGGCAAGCTATGAGTACTCTGAAGTGCTTGCAATCCATTGTGAGTATCCAGTCACAGGTCATTGCAAGGAAACTCCAGAACGTTGAAGGAAGATGGGATTGTGGTGAATATGAAGATAAGATCATAAGGATGGACTCAAACAGTGAGAGAAAGTGGGATCACAGCATTTTAATGAAGAAAGAGGTAGATTCCTCTAGCATAAGCAAGAAAGAAGCTGCTATTAGGAAAGAAAGAGTAAAAGAATGGTCATATAACCATAGGAAATCGGCTGAATCAGAAAGAAATGGAAGATGGAGGTATTGGATGGAGCAGGGGGTAGACACACAGCATTCTAAGAGTAAAGAACTTGAAGATTTAGACTCAGTTTTCAGCTCACATTCTAGAGCAGTAGAAGATTGTGGAAGAAGACAACTAAAGCTTAGACATATTCAGAAAGAAAATGAAGATGAAGGATTAGATTCACCAATACTTTCTTCCAGAAACTCTTACCCTCAAAGGAGTCAAAGTACAGAGAGAGAAGATTACTCATTTCCAAGATCTCCTGCGATTCCAACATATATGGCTGCAACAAAATCAACACAGGCAAAAGTAAGATCAACAAGTACCCCAAAAACAAGGATAGGAGGGAATTGGGATATGAACTATGATTGTTCTTCACCGTGCAAGGGATCTCCTAGCTTAAAAGGCCTTTCAAGGCCATGA 1167 0.401 MAKKGWFSMVERIFTHSTQEKKEKRRKWIFGRLKNKRFPLIEALPPLGETRLSEAEEEHNRHALTVAIASAEAALNAAQVAVEVVKFQSVHQCKGKLREVNHDASISTHKCKKKIEESAALKIQTTFRGYLARKALRALKGIVKLQAIIRGRAVRRQAMSTLKCLQSIVSIQSQVIARKLQNVEGRWDCGEYEDKIIRMDSNSERKWDHSILMKKEVDSSSISKKEAAIRKERVKEWSYNHRKSAESERNGRWRYWMEQGVDTQHSKSKELEDLDSVFSSHSRAVEDCGRRQLKLRHIQKENEDEGLDSPILSSRNSYPQRSQSTEREDYSFPRSPAIPTYMAATKSTQAKVRSTSTPKTRIGGNWDMNYDCSSPCKGSPSLKGLSRP 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01184 388 MobiDBLite consensus disorder prediction 299 388 - -
Vifa2g01184 388 MobiDBLite consensus disorder prediction 309 330 - -
Vifa2g01184 388 PANTHER IQ-DOMAIN 5-RELATED 1 373 - -
Vifa2g01184 388 SMART iq_5 115 137 IPR000048 GO:0005515
Vifa2g01184 388 MobiDBLite consensus disorder prediction 341 363 - -
Vifa2g01184 388 ProSiteProfiles IQ motif profile. 116 144 IPR000048 GO:0005515
Vifa2g01184 388 Gene3D - 113 168 - -
Vifa2g01184 388 ProSiteProfiles IQ motif profile. 140 167 IPR000048 GO:0005515
Vifa2g01184 388 FunFam IQ-domain 11 115 166 - -
Vifa2g01184 388 Pfam IQ calmodulin-binding motif 118 137 IPR000048 GO:0005515
Vifa2g01184 388 Pfam Protein of unknown function (DUF4005) 310 361 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01184 Vifa-Chr2 319541619 319543215 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01184 3 378 IQD Protein Family AT5G13460 42.532 2.16e-78 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01184 - - mtr:11425670 494.197