Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01183 ATGGAGCCCTCACACTCGCCACTGCCAGTGAAAAAAGAACCCTCAGAACTAGAATCAGTGAAAAGAAAATCTCGTCCAGAAAGCAATGATGAAAGGAAGAAGAAGAAACCAGCCCCAAACCTTGATTATATGAAGCCAGAAAAGATGAATAGTGGTGAGTCCTCAAGAAGCTTATGTGGTATATGCTTTCATTCAAAACCAGATCCTGATATGTTCAAAAGCAATAGTTGCAATCACTCCTTTTGTGTTGATTGTATTTCCAAATACATGGATTCTCAAATAAACAACAACATGGTTAAAGTGATATGTCCAAATCCAAATTGTTATATGAAATTGAAGCCAGAACATTTGGAAAATATCATGCCTCGTGAATTTTTTGATCGATGGGAATTCGCAAAGTATACGTCTAAAATTCCATTGGAGCAGAAGACTTATTGTCCCTATGAGAATTGTTCTATTTTGTTGGTGAATGATAACTACGGTGGAGAAGTTGTTGTGACGAGCTGCGAGTGTCCATATTGTCATAGATTATTCTGTGCAAAGTGTAGGGTTCCGTGGCATGCTGAGATGAATTGTCAAGAATTTCAAAATTTGAAAGGTCCTAAACAAGAGCAGTTTTGA 621 0.3752 MEPSHSPLPVKKEPSELESVKRKSRPESNDERKKKKPAPNLDYMKPEKMNSGESSRSLCGICFHSKPDPDMFKSNSCNHSFCVDCISKYMDSQINNNMVKVICPNPNCYMKLKPEHLENIMPREFFDRWEFAKYTSKIPLEQKTYCPYENCSILLVNDNYGGEVVVTSCECPYCHRLFCAKCRVPWHAEMNCQEFQNLKGPKQEQF 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01183 206 FunFam RBR-type E3 ubiquitin transferase 54 140 - -
Vifa2g01183 206 MobiDBLite consensus disorder prediction 1 42 - -
Vifa2g01183 206 SUPERFAMILY RING/U-box 54 137 - -
Vifa2g01183 206 ProSiteProfiles Zinc finger RING-type profile. 59 104 IPR001841 -
Vifa2g01183 206 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 18 199 IPR031127 GO:0004842|GO:0016567
Vifa2g01183 206 MobiDBLite consensus disorder prediction 1 54 - -
Vifa2g01183 206 SUPERFAMILY RING/U-box 139 197 - -
Vifa2g01183 206 Pfam IBR domain, a half RING-finger domain 133 192 IPR002867 GO:0008270
Vifa2g01183 206 CDD BRcat_RBR_unk 142 195 - -
Vifa2g01183 206 ProSitePatterns Zinc finger RING-type signature. 77 86 IPR017907 -
Vifa2g01183 206 ProSiteProfiles TRIAD supradomain profile. 55 206 IPR044066 -
Vifa2g01183 206 SMART ibrneu5 127 192 IPR002867 GO:0008270
Vifa2g01183 206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 140 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01183 Vifa-Chr2 319443377 319443997 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01183 52 196 C3H Transcription Factor Family AT2G19610 27.815 3.05e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01183 K11975 - mtr:25481406 261.151