Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01182 ATGAGTCAAAACCAGAGACTTTCCATGACTCGGTCTCGTACTTCTCTTTCAACAAATATTCATGCAAATGGAATTCAAAATACAATGAAAAGAAAATTGCTTGCAGCAGACAGCGATAATGAGAAGAAGAAAACAAAGAAAGCAACAACTAGTTATCATCATAAATCCTCAAAAAGATTCAACTGCGGTATATGCTTTGAATCTGTAACATTCTCTAAAATCTCCGCAAACACTTCATGCAACCATCCATTTTGTACTAACTGCATATCCAAGTATGTGAATGTTCAAATAAACAAAAATGCTACAAAAGTGAGTTGTCCAAATCCAGAATGTTCCGTGGAACTGAAACCGCAACATTTGCAATCCATTTTACCTACAAAACTCATTGTTGAATGGGAATCTGCAATTTGCGAGTCTTCCATTTCTTTGAGGCAAAGAATTTACTGTCCTTATATGAATTGTTCTCTTCTGTTGGTGAATGATGGGGTAGAGGCTGTTACAAGTTGTGAATGTCCTTCTTGTCATAGGCTATTCTGTGCACAATGTAAGGTTCCATGGCATGGAGATATGAATTGCCAGGAATTTCAGCAGTCGAAAACTGGTCGAGATAATGAAAAACAATTGGATGAGAAATTTTATGAGTTGGCTAGAACACAAAATTGGCAGAGATGTCCAGGATGTTCTATGTATGTCCAGAAAAATGGTGGATGTAATAACATGTCTTGCAGGTTGTATGTATAG 741 0.3671 MSQNQRLSMTRSRTSLSTNIHANGIQNTMKRKLLAADSDNEKKKTKKATTSYHHKSSKRFNCGICFESVTFSKISANTSCNHPFCTNCISKYVNVQINKNATKVSCPNPECSVELKPQHLQSILPTKLIVEWESAICESSISLRQRIYCPYMNCSLLLVNDGVEAVTSCECPSCHRLFCAQCKVPWHGDMNCQEFQQSKTGRDNEKQLDEKFYELARTQNWQRCPGCSMYVQKNGGCNNMSCRLYV 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01182 246 SUPERFAMILY RING/U-box 57 140 - -
Vifa2g01182 246 ProSiteProfiles Zinc finger RING-type profile. 62 107 IPR001841 -
Vifa2g01182 246 Pfam IBR domain, a half RING-finger domain 138 192 IPR002867 GO:0008270
Vifa2g01182 246 ProSitePatterns Zinc finger RING-type signature. 80 89 IPR017907 -
Vifa2g01182 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 143 IPR013083 -
Vifa2g01182 246 SUPERFAMILY RING/U-box 209 242 - -
Vifa2g01182 246 Gene3D - 190 244 - -
Vifa2g01182 246 FunFam RBR-type E3 ubiquitin transferase 57 143 - -
Vifa2g01182 246 ProSiteProfiles TRIAD supradomain profile. 58 246 IPR044066 -
Vifa2g01182 246 SMART ibrneu5 130 192 IPR002867 GO:0008270
Vifa2g01182 246 SUPERFAMILY RING/U-box 144 198 - -
Vifa2g01182 246 CDD BRcat_RBR_unk 145 195 - -
Vifa2g01182 246 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 33 242 IPR031127 GO:0004842|GO:0016567
Vifa2g01182 246 Pfam Zinc finger, C3HC4 type (RING finger) 62 108 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01182 Vifa-Chr2 319304532 319305272 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01182 61 243 C3H Transcription Factor Family AT2G19610 29.016 1.80e-23 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01182 K11975 - psat:127080644 359.377