Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01181 ATGAATCGGTCTCGTACTTCTGTTTCAACAAATAGTCATGTAAAAGGAATTCAAATTACAATGAGGAGAAAATCTCATGGTCAATCTTCAAAAAGATTCAACTGCGGTATATGCTTCGATTCCTTGACAGTCTCTAATGCCTTCACCAACACTTCATGCAACCATCCATTTTGTACTAACTGCATATCCAAGTACGTGAATGTTCAAATAAACAAGAGTGCGGTTAAAGTGAGTTGTCCAAATCCAGAATGTTCTGTGGAACTGAAACCACAACATTTGCAATCCATTTTACCTAAGCAAGTGATTGTTGAATGGGAATCTGCAATTTGTGAGTCTTCAATTTCTTTGAGGAAAAGATTTTACTGCCCTTACAAGAATTGTTCTCTTTTGTTGGTGAATGATGGAGTTGAGGTTGTTACAAGTTGTGAATGTCCTTCTTGTCATAGACTATTCTGTGCACAATGTAAGGTTCCATGGCATGCAGACATGAGTTGCCGGAGATTTCAGAAGTCGAAAACTGGTCGAGATAATGAAAAACTATTGGATGAGAAATTTTATGAGTTAGCTAAAAGAAAAAAGTGGCAGAAATGTCCCAAATGTTCTATACATGTTCAGAGAACTGGTGGATGTGAACACATATCATGCAGGTGTGGTTGTAACTTCTGCTACAAGTGTGGTAAAGATTGGAAACATGGACATACGTGCAATACTACTAGATTATAA 723 0.3721 MNRSRTSVSTNSHVKGIQITMRRKSHGQSSKRFNCGICFDSLTVSNAFTNTSCNHPFCTNCISKYVNVQINKSAVKVSCPNPECSVELKPQHLQSILPKQVIVEWESAICESSISLRKRFYCPYKNCSLLLVNDGVEVVTSCECPSCHRLFCAQCKVPWHADMSCRRFQKSKTGRDNEKLLDEKFYELAKRKKWQKCPKCSIHVQRTGGCEHISCRCGCNFCYKCGKDWKHGHTCNTTRL 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01181 240 Pfam Zinc finger, C3HC4 type (RING finger) 35 80 IPR018957 GO:0046872
Vifa2g01181 240 Pfam IBR domain, a half RING-finger domain 188 235 IPR002867 GO:0008270
Vifa2g01181 240 Pfam IBR domain, a half RING-finger domain 111 165 IPR002867 GO:0008270
Vifa2g01181 240 SMART ibrneu5 179 235 IPR002867 GO:0008270
Vifa2g01181 240 SMART ibrneu5 103 165 IPR002867 GO:0008270
Vifa2g01181 240 SUPERFAMILY RING/U-box 116 171 - -
Vifa2g01181 240 Gene3D - 163 239 - -
Vifa2g01181 240 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 22 229 IPR031127 GO:0004842|GO:0016567
Vifa2g01181 240 ProSiteProfiles Zinc finger RING-type profile. 35 80 IPR001841 -
Vifa2g01181 240 FunFam RBR-type E3 ubiquitin transferase 30 116 - -
Vifa2g01181 240 CDD BRcat_RBR_unk 119 168 - -
Vifa2g01181 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 117 IPR013083 -
Vifa2g01181 240 ProSitePatterns Zinc finger RING-type signature. 53 62 IPR017907 -
Vifa2g01181 240 SUPERFAMILY RING/U-box 182 237 - -
Vifa2g01181 240 SUPERFAMILY RING/U-box 29 113 - -
Vifa2g01181 240 ProSiteProfiles TRIAD supradomain profile. 31 240 IPR044066 -
Vifa2g01181 240 CDD Rcat_RBR_unk 193 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01181 Vifa-Chr2 319188068 319188924 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01181 34 226 C3H Transcription Factor Family AT2G19610 29.412 3.13e-24 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01181 K11975 - tpra:123915135 346.665