Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01180 ATGATGGCGGCCTCTCCAATATCATTATTAATAAATTACATTCTTCCATCCTTCATCGTGATATGTAAAGCTAACAACTTCCATTCAACAAATAATGAAGCAAATGGATTTCAATCTGTTGAGGCAGACAACGATAATGAAAAGCAGAAAGCAACAACTGCTTATCAAGGTAAATCCTCAAAAAGATTCAGCTGCGGTATATGCTTTGATTCTGTAAAAGACTCTAAAATGTTCACAAACCCTTCATGCAATCACCGCTTTTGTACCAAATGCGTATCCAAGTATGTCAAACTTAAAAGAAAAGAAAAAGTGGTGAAACTCACCTGTCCGGATCCAGAATGTTCCTCCAAACTCAAACCACAACAATTTCAATCTATTTTACCTAAAGACCTCCTTGTTGAATGGGAATCTGCGATTTACGAGTCTTCGGTTTCTCTGAAGCAAAAATTTTATTGCCCTTATGAGAGTTGTTCAATTTTGATGGTGAATGACGGGGTAAAAGTTGTTACAAGTTGTGAATGTCCCTCTTGTCATAGACTATTCTGTGCACAATGTAAAGTTCCATGGCACGTTGATATGAATTGCCGGAAATTTCAGAAGTCGACAAGGGATGAAAAACAATTGGATAAGAAATTTTTGGAGTTGGCTAAAAGAAAAAAGTGGCAGCAATGTCCCAAATGTTCAATGCATGTTCAGAGAAAGGGTGGATGTGAACACATTTCATGCAGGTGTGGATGTAACTTCTGCTACGGGTGTGGAAAGGATTGGATCCATGGACATATTTGCAATCTACGTAGATCATAA 804 0.3769 MMAASPISLLINYILPSFIVICKANNFHSTNNEANGFQSVEADNDNEKQKATTAYQGKSSKRFSCGICFDSVKDSKMFTNPSCNHRFCTKCVSKYVKLKRKEKVVKLTCPDPECSSKLKPQQFQSILPKDLLVEWESAIYESSVSLKQKFYCPYESCSILMVNDGVKVVTSCECPSCHRLFCAQCKVPWHVDMNCRKFQKSTRDEKQLDKKFLELAKRKKWQQCPKCSMHVQRKGGCEHISCRCGCNFCYGCGKDWIHGHICNLRRS 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01180 267 ProSitePatterns Zinc finger RING-type signature. 83 92 IPR017907 -
Vifa2g01180 267 ProSiteProfiles Zinc finger RING-type profile. 65 110 IPR001841 -
Vifa2g01180 267 ProSiteProfiles TRIAD supradomain profile. 61 267 IPR044066 -
Vifa2g01180 267 Gene3D - 192 266 - -
Vifa2g01180 267 SUPERFAMILY RING/U-box 146 200 - -
Vifa2g01180 267 SUPERFAMILY RING/U-box 60 143 - -
Vifa2g01180 267 Pfam IBR domain, a half RING-finger domain 138 195 IPR002867 GO:0008270
Vifa2g01180 267 Pfam IBR domain, a half RING-finger domain 209 261 IPR002867 GO:0008270
Vifa2g01180 267 SUPERFAMILY RING/U-box 209 261 - -
Vifa2g01180 267 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 48 258 IPR031127 GO:0004842|GO:0016567
Vifa2g01180 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 146 IPR013083 -
Vifa2g01180 267 FunFam RBR-type E3 ubiquitin transferase 60 146 - -
Vifa2g01180 267 SMART ibrneu5 206 262 IPR002867 GO:0008270
Vifa2g01180 267 SMART ibrneu5 133 195 IPR002867 GO:0008270
Vifa2g01180 267 CDD Rcat_RBR_unk 220 256 - -
Vifa2g01180 267 Pfam Zinc finger, C3HC4 type (RING finger) 65 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01180 Vifa-Chr2 318941391 318942299 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01180 64 253 C3H Transcription Factor Family AT2G19610 31.343 4.77e-25 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01180 K11975 - tpra:123915135 322.013