Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01165 ATGTCGTCCTACTCAAGAAGATCAAGGTATTCGCCATCTCCCTCTCCCTTGTCCTACAGGCGTTACGGTAGGTCTTTGTCCAGGTCTCTCTCGAGGTCCAGATCCAGAAGCCGTTTGAGGAGCGTATCACGAGATGCTGAAAATCCGGGGAACAATTTGTATGTGACAGGACTGTCTCCTAGGATCACCAAGAGAGAACTGGAGAAGCATTTTACTGCTGAAGGAAAAGTGATAGATGTTCATCTGGTTGTTGATCCATGGACAAGGGAATCCCGTGGTTTTGGATTTGTGACAATGGATACTCTTGAAGAAGCTGATCGTTGTGTGAAGTATCTAGATCGATCTGTACTTGAAGGGCGTGTTATCATGGTGGAGAAGGCTAGAAGACGACGCGGTCGAACCCCGACACCTGGGAAATATCTAGGTCTCAGGACTACTCGAGGTGACAGCGTCGTTCCCCAAGCTACTCTCCTCGACGTTCTCCTAGCTATTCTCCTTATAGAAGAAGCTACAGTCGATCACCTTCTGATCGTAGTAGAAGTCGCTCTTACTCTCCTGACTATAGGCGAAGGACATCCTACTCTCCTGAATACAGGCGAAGGACATCCTACTCTTCTGAATACATGCGAAGGAGGGCATACTCGCCATACTCTAGCCGACACAGGTCATACTATCGTTATGATCGACACAGGTCATATTCCCGGTCTCGCTCTCCTTACAGCAGGTCTCCTGTCAGTTTCCCGAAGCGTTTCACCCAAGCCAAGGAAGAGATCAGGAAGGAGTCATTCAAGAAGCTCTAGAAGGAGTGGTGGTTATTCCAAACATAAGTATTCTCGATCAAGAAGCTCAAGTGTAAGGGCGAGTTCTAGATCGTTTTCAAGGTCCAATACGCCTGGATCTACCTCTCCTTCAAATTAA 918 0.4771 MSSYSRRSRYSPSPSPLSYRRYGRSLSRSLSRSRSRSRLRSVSRDAENPGNNLYVTGLSPRITKRELEKHFTAEGKVIDVHLVVDPWTRESRGFGFVTMDTLEEADRCVKYLDRSVLEGRVIMVEKARRRRGRTPTPGKYLGLRTTRGDSVVPQATLLDVLLAILLIEEATVDHLLIVVEVALTLLTIGEGHPTLLNTGEGHPTLLNTCEGGHTRHTLADTGHTIVMIDTGHIPGLALLTAGLLSVSRSVSPKPRKRSGRSHSRSSRRSGGYSKHKYSRSRSSSVRASSRSFSRSNTPGSTSPSN 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01165 305 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 37 290 - -
Vifa2g01165 305 MobiDBLite consensus disorder prediction 1 52 - -
Vifa2g01165 305 MobiDBLite consensus disorder prediction 253 281 - -
Vifa2g01165 305 SMART rrm1_1 52 125 IPR000504 GO:0003723
Vifa2g01165 305 MobiDBLite consensus disorder prediction 249 305 - -
Vifa2g01165 305 CDD RRM_SF 53 125 - -
Vifa2g01165 305 FunFam Serine/arginine-rich splicing factor SR45a 3 135 - -
Vifa2g01165 305 Gene3D - 20 150 IPR012677 -
Vifa2g01165 305 SUPERFAMILY RNA-binding domain, RBD 45 146 IPR035979 GO:0003676
Vifa2g01165 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 129 IPR000504 GO:0003723
Vifa2g01165 305 MobiDBLite consensus disorder prediction 282 305 - -
Vifa2g01165 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 122 IPR000504 GO:0003723
Vifa2g01165 305 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01165 Vifa-Chr2 312687294 312689482 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01165 52 133 Eukaryotic Initiation Factors Gene Family AT2G36660 34.146 1.37e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01165 - - gmx:100805126 210.305