Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa2g01164 | ATGTCGTCCTACTCAAGAAGATCAAGGTATTCGCCATCTCCCTCTCCCTTGTCCTACAGGCGTTACGGTAGGTCTTTGTCCAGGTCTCTCTCGAGGTCCAGATCCAGAAGCCGTTTGAGGAGCGTATCACGAGATGCTGAAAATCCGGGGAACAATTTGTATGTGACAGGACTGTCTCCTAGGATCACCAAGAGAGAACTGGAGAAGCATTTTACTGCTGAAGGAAAAGTGATAGATGTTCATCTGGTTGTTGATCCATGGACAAGGGAATCCCGTGGTTTTGGATTTGTGACAATGGATACTCTTGAAGAAGCTGATCGTTGTGTGAAGTATCTAGATCGATCTGTACTTGAAGGGCGTGTTATCATGGTGGAGAAGGCTAGAAGACGACGCGGTCGAACCCCGACACCTGGGAAATATCTAGGTCTCAGGACTACTCGAGGACAGCGTCGTTCCCCAAGCTACTCTCCTCGACGTTCTCCTAGCTATTCTCCTTATAGAAGAAGCTACAGTCGATCACCTTCTGATCGTAGTAGAAGTCGCTCTTACTCTCCTGACTATAGGCGAAGGACATCCTACTCTCCTGAATACAGGCGAAGGACATCCTACTCTTCTGAATACATGCGAAGGAGGGCATACTCGCCATACTCTAGCCGACACAGGTCATACTATCGTTATGATCGACACAGATATGATTCACATGATGATAGCTACTACAGAAGGTACCGATACAGGTCAGTTTCCCGAAGCGTTTCACCCAAGCCAAGGAAGAGATCAGGAAGGAGTCATTCAAGAAGCTCTAGAAGGAGTGGTGGTTATTCCAAACATAAGTATTCTCGATCAAGAAGCTCAAGTGTAAGGGCGAGTTCTAGATCGTTTTCAAGGTCCAATACGCCTGGATCTACCTCTCCTTCAAATTAA | 921 | 0.4691 | MSSYSRRSRYSPSPSPLSYRRYGRSLSRSLSRSRSRSRLRSVSRDAENPGNNLYVTGLSPRITKRELEKHFTAEGKVIDVHLVVDPWTRESRGFGFVTMDTLEEADRCVKYLDRSVLEGRVIMVEKARRRRGRTPTPGKYLGLRTTRGQRRSPSYSPRRSPSYSPYRRSYSRSPSDRSRSRSYSPDYRRRTSYSPEYRRRTSYSSEYMRRRAYSPYSSRHRSYYRYDRHRYDSHDDSYYRRYRYRSVSRSVSPKPRKRSGRSHSRSSRRSGGYSKHKYSRSRSSSVRASSRSFSRSNTPGSTSPSN | 306 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa2g01164 | 306 | Gene3D | - | 5 | 135 | IPR012677 | - | |
Vifa2g01164 | 306 | MobiDBLite | consensus disorder prediction | 172 | 202 | - | - | |
Vifa2g01164 | 306 | MobiDBLite | consensus disorder prediction | 1 | 52 | - | - | |
Vifa2g01164 | 306 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 53 | 122 | IPR000504 | GO:0003723 | |
Vifa2g01164 | 306 | MobiDBLite | consensus disorder prediction | 244 | 306 | - | - | |
Vifa2g01164 | 306 | MobiDBLite | consensus disorder prediction | 128 | 202 | - | - | |
Vifa2g01164 | 306 | MobiDBLite | consensus disorder prediction | 147 | 171 | - | - | |
Vifa2g01164 | 306 | SMART | rrm1_1 | 52 | 125 | IPR000504 | GO:0003723 | |
Vifa2g01164 | 306 | PANTHER | TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED | 43 | 246 | - | - | |
Vifa2g01164 | 306 | MobiDBLite | consensus disorder prediction | 250 | 282 | - | - | |
Vifa2g01164 | 306 | FunFam | Serine/arginine-rich splicing factor SR45a | 3 | 135 | - | - | |
Vifa2g01164 | 306 | CDD | RRM_SF | 53 | 125 | - | - | |
Vifa2g01164 | 306 | MobiDBLite | consensus disorder prediction | 283 | 306 | - | - | |
Vifa2g01164 | 306 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 51 | 129 | IPR000504 | GO:0003723 | |
Vifa2g01164 | 306 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Vifa2g01164 | 306 | SUPERFAMILY | RNA-binding domain, RBD | 45 | 154 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa2g01164 | Vifa-Chr2 | 312687294 | 312689482 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa2g01164 | 52 | 133 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 34.146 | 2.59e-08 | 53.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa2g01164 | - | - | mtr:25490768 | 226.098 |