Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01164 ATGTCGTCCTACTCAAGAAGATCAAGGTATTCGCCATCTCCCTCTCCCTTGTCCTACAGGCGTTACGGTAGGTCTTTGTCCAGGTCTCTCTCGAGGTCCAGATCCAGAAGCCGTTTGAGGAGCGTATCACGAGATGCTGAAAATCCGGGGAACAATTTGTATGTGACAGGACTGTCTCCTAGGATCACCAAGAGAGAACTGGAGAAGCATTTTACTGCTGAAGGAAAAGTGATAGATGTTCATCTGGTTGTTGATCCATGGACAAGGGAATCCCGTGGTTTTGGATTTGTGACAATGGATACTCTTGAAGAAGCTGATCGTTGTGTGAAGTATCTAGATCGATCTGTACTTGAAGGGCGTGTTATCATGGTGGAGAAGGCTAGAAGACGACGCGGTCGAACCCCGACACCTGGGAAATATCTAGGTCTCAGGACTACTCGAGGACAGCGTCGTTCCCCAAGCTACTCTCCTCGACGTTCTCCTAGCTATTCTCCTTATAGAAGAAGCTACAGTCGATCACCTTCTGATCGTAGTAGAAGTCGCTCTTACTCTCCTGACTATAGGCGAAGGACATCCTACTCTCCTGAATACAGGCGAAGGACATCCTACTCTTCTGAATACATGCGAAGGAGGGCATACTCGCCATACTCTAGCCGACACAGGTCATACTATCGTTATGATCGACACAGATATGATTCACATGATGATAGCTACTACAGAAGGTACCGATACAGGTCAGTTTCCCGAAGCGTTTCACCCAAGCCAAGGAAGAGATCAGGAAGGAGTCATTCAAGAAGCTCTAGAAGGAGTGGTGGTTATTCCAAACATAAGTATTCTCGATCAAGAAGCTCAAGTGTAAGGGCGAGTTCTAGATCGTTTTCAAGGTCCAATACGCCTGGATCTACCTCTCCTTCAAATTAA 921 0.4691 MSSYSRRSRYSPSPSPLSYRRYGRSLSRSLSRSRSRSRLRSVSRDAENPGNNLYVTGLSPRITKRELEKHFTAEGKVIDVHLVVDPWTRESRGFGFVTMDTLEEADRCVKYLDRSVLEGRVIMVEKARRRRGRTPTPGKYLGLRTTRGQRRSPSYSPRRSPSYSPYRRSYSRSPSDRSRSRSYSPDYRRRTSYSPEYRRRTSYSSEYMRRRAYSPYSSRHRSYYRYDRHRYDSHDDSYYRRYRYRSVSRSVSPKPRKRSGRSHSRSSRRSGGYSKHKYSRSRSSSVRASSRSFSRSNTPGSTSPSN 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01164 306 Gene3D - 5 135 IPR012677 -
Vifa2g01164 306 MobiDBLite consensus disorder prediction 172 202 - -
Vifa2g01164 306 MobiDBLite consensus disorder prediction 1 52 - -
Vifa2g01164 306 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 122 IPR000504 GO:0003723
Vifa2g01164 306 MobiDBLite consensus disorder prediction 244 306 - -
Vifa2g01164 306 MobiDBLite consensus disorder prediction 128 202 - -
Vifa2g01164 306 MobiDBLite consensus disorder prediction 147 171 - -
Vifa2g01164 306 SMART rrm1_1 52 125 IPR000504 GO:0003723
Vifa2g01164 306 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 43 246 - -
Vifa2g01164 306 MobiDBLite consensus disorder prediction 250 282 - -
Vifa2g01164 306 FunFam Serine/arginine-rich splicing factor SR45a 3 135 - -
Vifa2g01164 306 CDD RRM_SF 53 125 - -
Vifa2g01164 306 MobiDBLite consensus disorder prediction 283 306 - -
Vifa2g01164 306 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 129 IPR000504 GO:0003723
Vifa2g01164 306 MobiDBLite consensus disorder prediction 1 30 - -
Vifa2g01164 306 SUPERFAMILY RNA-binding domain, RBD 45 154 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01164 Vifa-Chr2 312687294 312689482 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01164 52 133 Eukaryotic Initiation Factors Gene Family AT2G36660 34.146 2.59e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01164 - - mtr:25490768 226.098