Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01162 ATGAAAAAACCATCAAGTCCTAGTTTGCATCAATCTAACCAGAGGAAAAAAAACACTGGAAATGGCATAAATAGACATAATCCTAAGAATGATGATTATGGTAGCATGACAAATTTCAAGTATTTTGTGAAAAAAATTTCAGGTCTTTTCACATTGATTCTGTCTGGTAAATCAAAAACATCCTCAGAAGGTGTTGAGTATGATAATAGAAAGAATAATAAAGTGAGAGGAGTATCATCTTCAGCAACAGATGTATCATCTGAAGGTTCTAAGAGTTCATCGAAATGGAAAGCTTCTCATCCTTCAACACCAACTAGTACTTCAAGTAATCAGATTGGAATTGGGAATTTTTCATTTGAGGAACTTTACAAGGCAACAGGAAAATTTTCTCCAGATAATAAGATTGGTGAAGGGGCGTTTGGAATAGTGTATAAAGGAAGGCTTTATGATGGAACCCTTGTGGCTGTAAAGTGTGCTAGGAAGGATGTACAAAAGAAGCACTTGGCTGAGTTCAAGAATGAAATAAACACGTTATCGAAAATTGAGCATCTGAATCTTGTGAAATGGCATGGATATTTGGAGCATGGAGATGAAAAGATTATTGTGATTGAATATGTTAATAATGGAACTCTTAGGGAACATCTAGATGGTGTGAGAGGAAATGGACTTGAAATTGGTGAGCGTCTAGATGTAGCAATTGATGTAGCTCATGCAGTTACGTATCTTCATATGTATACAGATCATCCAATCATTCACAGAGATATAAAAGCATCAAATATCTTAATAACAGACAGTTTAAGGGCAAAAGTAGCAGATTTTGGTTTTGCTAGGTTGGCTTCAGAGGACCCTAATGCAACTCATATTTCGACTCAAGTTAAAGGAACAGCTGGTTACTTGGATCCTGATTACATGAGAACAAGGCAACTCTCTGAAAAGAGTGATGTTTATTCATTTGGTGTGTTACTTGTTGAAATGATGACAGGAAGATATCCAGTTGAACCAAAGAAACCCCTTAATGAGAGAGTTACAATTAAATGGGCAATGCAGTTATTAAAACAAGGAGAAGAAGTGATTGCAATGGATCCAAGGCTTAGGAGAAGTTCAGCCTCAAACAAAGCTGTACAAAAGGTTCTCAAGCTTGCATTCCAATGCCTTGCACCTGTACGAAGATCGCGGCCATCGATGAAGAATTGCGCAGAGGTTCTATGGGAAATCCGAAAAGAATTCAGAGACAAAGTGTTTTCTCGTCCTCCCCCTGCTTCTCACCATTCAGCAGATTTTCCTCAGAAAGATTCTAGAAAGAATAGACGTAAGACGTTCGGTATTGAAGATGACAAGAAGTATAAATTTGTGTCAGCATAA 1362 0.3722 MKKPSSPSLHQSNQRKKNTGNGINRHNPKNDDYGSMTNFKYFVKKISGLFTLILSGKSKTSSEGVEYDNRKNNKVRGVSSSATDVSSEGSKSSSKWKASHPSTPTSTSSNQIGIGNFSFEELYKATGKFSPDNKIGEGAFGIVYKGRLYDGTLVAVKCARKDVQKKHLAEFKNEINTLSKIEHLNLVKWHGYLEHGDEKIIVIEYVNNGTLREHLDGVRGNGLEIGERLDVAIDVAHAVTYLHMYTDHPIIHRDIKASNILITDSLRAKVADFGFARLASEDPNATHISTQVKGTAGYLDPDYMRTRQLSEKSDVYSFGVLLVEMMTGRYPVEPKKPLNERVTIKWAMQLLKQGEEVIAMDPRLRRSSASNKAVQKVLKLAFQCLAPVRRSRPSMKNCAEVLWEIRKEFRDKVFSRPPPASHHSADFPQKDSRKNRRKTFGIEDDKKYKFVSA 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01162 453 MobiDBLite consensus disorder prediction 414 453 - -
Vifa2g01162 453 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 206 416 - -
Vifa2g01162 453 Gene3D Transferase(Phosphotransferase) domain 1 206 416 - -
Vifa2g01162 453 PANTHER OS01G0750732 PROTEIN 4 410 - -
Vifa2g01162 453 MobiDBLite consensus disorder prediction 426 453 - -
Vifa2g01162 453 Pfam Protein tyrosine and serine/threonine kinase 132 402 IPR001245 GO:0004672|GO:0006468
Vifa2g01162 453 MobiDBLite consensus disorder prediction 74 112 - -
Vifa2g01162 453 ProSitePatterns Protein kinases ATP-binding region signature. 135 161 IPR017441 GO:0005524
Vifa2g01162 453 Gene3D Phosphorylase Kinase; domain 1 88 205 - -
Vifa2g01162 453 MobiDBLite consensus disorder prediction 61 112 - -
Vifa2g01162 453 ProSiteProfiles Protein kinase domain profile. 129 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01162 453 MobiDBLite consensus disorder prediction 1 34 - -
Vifa2g01162 453 SMART serkin_6 129 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01162 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672|GO:0006468
Vifa2g01162 453 SUPERFAMILY Protein kinase-like (PK-like) 104 405 IPR011009 -
Vifa2g01162 453 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01162 Vifa-Chr2 312608754 312610988 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01162 117 405 Receptor kinase-like Gene Family AT1G79620 42.808 1.29e-63 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Vifa2g01162 PK_Tyr_Ser-Thr 3.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01162 - - gmx:100819818 662.144