Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01161 ATGGAGGGTATTATAGGAGAAAAACTGATCTCAGCTTTTGTGGAAGTGTTGTTAGAAAAGCTTGTTTCAACCGAGTTCGTGGACTACTTCCATCTGGACTTTTCGCTCTTGGAAAAGCTAAAGACAACACTGGTGAGGCTGGATATGCTGCGAGATGCTGTCTTTGAAGCTGACAATTTGTTTGACCAAATCAATTTGATCCAGTATCAAAATCAAACCGCTACTAAGGTGCTGAAAAACTTTTCTTTCCTTTTTAAACGCTATAGTGGTTTGATTAATTCCAAAATACAAAAGTTAATTGAAAAGATAGAAGGCTTGAGTTCAGGAGAACAATTCGTTGAGTTAAGTGTCTCCAATTCCAGCACTGTTTTGCATGATGAATCTTCTACAAGTTCTATTTTGGATGATGATGCTTCTTTTATTTATGGAAGAGGCCGTGATATTGAGAAACTTAAAGATCTTTTGTTGTCTAGTAATGATGGTGATAGTAAAATAAGAGTCATTTCTATTGTTGGTATGGGAGGGATTGGTAAAACGACCCTTGCTAAACACCTTTACGATCATCCTCAAGTAAAGGGAAAATTTGAATTAAAAGTGTGGATAGATATCTCAAAAGATTTTGATCGTTTGAGTGTTTATGAAACTATTCTTCAATCTTTCACTTCACAATCTATCAATAATGATAACTTTAATTCTCAAATTCTTAAATCTTCCGAAACAAAAGGAAATCACACTAGTGACGTGACTACCGTATACCCGAATCTTCTATTGGTATCACTGCAGCAAATTTTAAGCACTTCAAATTTTTTGCTTGTCCTGGATGATGTGTGGGATACGAAATCTGTTGATTGGATATATTTGATGGACATCTTTAATGCCGGGGATACGGGAAGTAGGATCATCATCACAACACGGGATGAAAGAGTTGCAAGATCCTTACAAACCTTTCTTTTTGTCCACTATTTGAGACCTTTGGAAAGTGAAGATTGTTGGTCTTTGTTTTCCAGATATGCATTTGGAGCATGTGACAACCAGCAACGATCCTATCTAGAAGAAATTGGTAGGGAAATTGCAAAAAAGTGTGATGGATTACCATTAGCTGCAATTGAACTTGGGGCTCTTCTTTACGGCAAGTTGTCTCCAGCTGACTGGAATTATGTGCTAGAAAGTAACATTTGGGACTCGACAAACCATGAGGTGCACGCTGCTCTAGAATCGAGCTACTGTTATCTTTCGACTCCTTTAAAAAGATGCTTTGCATATTGCTCTCTTTTTCCAAAGAAGACCATTTTAGAAAAAAAATTGGTTGTTCAATTGTGGATTGCAGAAGATTTAGTAGAATTGTCCCCAGATCAAGAAAGTTGGGAAACAGTCGGAGAGGAATACTTTGATGTACTAGTGTCAAGGTCGTTGATACAACGTCGATTTATAGGTGATAAGGAAGCAAACTTTGAAATGCATAACCTCATCCATGATTTAACTACAATGGTTTCATCTCCAAAATGTATCAGATTGGACGAACATAATCCAGATGAAAGTGTACGTAAGTTGTCATACAATAGAGGGCTATATGACTCATTTGATAAATTTGATAAATTGTATGGAATAAAAAGTCTACGCACCTTTTTAGCATTACCGTTACAAGAACAATTTCCTCGTTGTTTGCTATCGAACAAGGTAGTACATGACTTGTTGCCAACAATGAAACAACTACACGTGTTGTCTTTGTCAAACTATAAGAGTATTACCGAGGTTCCCAACTCTATTGGAAATTTGTTATACCTGCAATACTTAAATCTTTCTCACACAAATATTGAAAGGCTGCCTTCTGAAACATGTGGACTTTACAATCTGCAGTTCTTGTTGTTGGGAGGCTGTAAAAGGCTCACTGAATTGCCTGAGAACATGGGAGAATTGGTTAATTTGCGTCACCTTGACATTAGTGACACTGCATTGACGGAGATTCCTGTACAAATAGCCAAGCTAAAAAATCTCAAAACGTTGTCCGACTTTATTGTCAGCAAGCATAAGGATGGATTGAAGGTTGAAGAGCTCGGTAAATTTCCCCACCTACAAGGAAAACTTTCCATATCACAACTACAAAATATTGATGACCCCTCTGAAGCTGATCGATCAAATATAAAGATGAAGACACAAATAGACGAGTTAGCTTTGGATTGGGATTGTGGTATTTCGTTTCCAGATTCACAAACTAAAAGAGTTGTATTTGAACATTTGCAACCTGCAACAAGTTTGAAAAGTCTCACTATCAAAGGTTATGGTGGAATCAGCTTTCCAAATTGGTTAGGTGATTTTTCATTTAGCAACATGGTGTATTTGAAGATCTCGAATTGTGGTGACTGTTTATGGCTTCCACCCCTTGGACAGCTGGGAAATCTGAAAGAACTCTTTATTGAAGTGATGCAATCAGTACAGACAATTGGTACTGAGTTCTATGAAAGTGATATCTCTTCATTTCAACCATTTCCCTCCTTGGAGACTCTTCATTTTGAGGATATGCAAGAGTGGGATGAATGGAACTTGGATGGAGGTACGGCTACCAAGTTTCCTTGTCTTAAAACATTGACACTATGTAAGTGCCCGAAATTGAGAATAGGAAAAATACTTCAAAATTTTCCTTCCTTATCTAATCTTGAGTTAAGAGAATGTCCACTACTAGTGCAATCAATGCCATCATCAAATCATATATTAAACCAACTGGCGTTCCCTCTAAATTCTCTTCAACAACTAACTATTGATGGCTTTCCGTCTCTGATGTCTTTCCCAACAGATAGTCTACCCAAGTCCTTGAAATTTCTCATAATCAATAATTGTGAGAATCTAGAGTTCATTCCTCATGAATACTTGCACAACTACACATCGCTTCAAGAATTAAAAATATCTTATAGCTGTAATTCAATGATATCATTTACCTTAGGCGCCCTCCCTGTCCTTAAGAGTCTGTTTATTGAGGGTTGTAAAAATCTGAAATCAATATTAACTGCAGAAGACACATCGCAAAAGAGTCTCTCAGTTTTGAGAAGCCTCAAAATATGGGATTGTAATGAACTGGAGTCATTTCCCCCAGGTGGATTGGCCACTCCAAACCTCATTTATTTTGCAGTGTGGAAGTGTGAGAAGCTTCCTTCACTACCTGAAGCAATGCACACTCTAACTAATCTTCAAGAAATGGAAATTGATAATCTACCAAATCTTCAATCTTTTGTCGTAGATGATTTACCTTATGCTTTGCGGGAATTGACTGTTGGCTCTGTTGGAGGGATTATGTGGAATATTGAGCCAACTTGGGAACATCTCAATTGTCTTTCAGTGTTGCGAATTAACGGCGACGGTACAGTGAACATGCTGATGAGGCCATTACTACCTGCATCGCTTGTGACATTATGCATTCGTGGTCTTAATAATACAAGCATTGATGGGACGTGGCTTCAACATCTCAATTCTCTCCAAAACCTTGAGATTGTTAATGCTCCCAAACTCAAGTCGTTGCCCAAAGGATTGCCTTCCTCTCTTTCAGTACTAAGTATCACTTGCTGTCCATTATTGGTAGCAACATTGCGGAGGAAGCGAGGGAAAGAGTGGCGTAAGATTGTTCACATTCCTGCCATAATTATCGACGACGAATTGATCACATAA 3657 0.379 MEGIIGEKLISAFVEVLLEKLVSTEFVDYFHLDFSLLEKLKTTLVRLDMLRDAVFEADNLFDQINLIQYQNQTATKVLKNFSFLFKRYSGLINSKIQKLIEKIEGLSSGEQFVELSVSNSSTVLHDESSTSSILDDDASFIYGRGRDIEKLKDLLLSSNDGDSKIRVISIVGMGGIGKTTLAKHLYDHPQVKGKFELKVWIDISKDFDRLSVYETILQSFTSQSINNDNFNSQILKSSETKGNHTSDVTTVYPNLLLVSLQQILSTSNFLLVLDDVWDTKSVDWIYLMDIFNAGDTGSRIIITTRDERVARSLQTFLFVHYLRPLESEDCWSLFSRYAFGACDNQQRSYLEEIGREIAKKCDGLPLAAIELGALLYGKLSPADWNYVLESNIWDSTNHEVHAALESSYCYLSTPLKRCFAYCSLFPKKTILEKKLVVQLWIAEDLVELSPDQESWETVGEEYFDVLVSRSLIQRRFIGDKEANFEMHNLIHDLTTMVSSPKCIRLDEHNPDESVRKLSYNRGLYDSFDKFDKLYGIKSLRTFLALPLQEQFPRCLLSNKVVHDLLPTMKQLHVLSLSNYKSITEVPNSIGNLLYLQYLNLSHTNIERLPSETCGLYNLQFLLLGGCKRLTELPENMGELVNLRHLDISDTALTEIPVQIAKLKNLKTLSDFIVSKHKDGLKVEELGKFPHLQGKLSISQLQNIDDPSEADRSNIKMKTQIDELALDWDCGISFPDSQTKRVVFEHLQPATSLKSLTIKGYGGISFPNWLGDFSFSNMVYLKISNCGDCLWLPPLGQLGNLKELFIEVMQSVQTIGTEFYESDISSFQPFPSLETLHFEDMQEWDEWNLDGGTATKFPCLKTLTLCKCPKLRIGKILQNFPSLSNLELRECPLLVQSMPSSNHILNQLAFPLNSLQQLTIDGFPSLMSFPTDSLPKSLKFLIINNCENLEFIPHEYLHNYTSLQELKISYSCNSMISFTLGALPVLKSLFIEGCKNLKSILTAEDTSQKSLSVLRSLKIWDCNELESFPPGGLATPNLIYFAVWKCEKLPSLPEAMHTLTNLQEMEIDNLPNLQSFVVDDLPYALRELTVGSVGGIMWNIEPTWEHLNCLSVLRINGDGTVNMLMRPLLPASLVTLCIRGLNNTSIDGTWLQHLNSLQNLEIVNAPKLKSLPKGLPSSLSVLSITCCPLLVATLRRKRGKEWRKIVHIPAIIIDDELIT 1218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01161 1218 Gene3D Ribonuclease Inhibitor 930 1088 IPR032675 -
Vifa2g01161 1218 Gene3D Ribonuclease Inhibitor 1094 1197 IPR032675 -
Vifa2g01161 1218 Pfam NB-ARC domain 147 418 IPR002182 GO:0043531
Vifa2g01161 1218 SUPERFAMILY L domain-like 486 923 - -
Vifa2g01161 1218 PRINTS Disease resistance protein signature 361 375 - -
Vifa2g01161 1218 PRINTS Disease resistance protein signature 877 893 - -
Vifa2g01161 1218 PRINTS Disease resistance protein signature 167 182 - -
Vifa2g01161 1218 PANTHER DISEASE RESISTANCE PROTEIN RP 38 842 IPR044974 GO:0006952
Vifa2g01161 1218 Gene3D Ribonuclease Inhibitor 549 923 IPR032675 -
Vifa2g01161 1218 SUPERFAMILY L domain-like 910 1195 - -
Vifa2g01161 1218 Gene3D - 124 317 IPR027417 -
Vifa2g01161 1218 Gene3D - 324 406 IPR042197 -
Vifa2g01161 1218 SMART LRR_typ_2 592 615 IPR003591 -
Vifa2g01161 1218 SMART LRR_typ_2 639 662 IPR003591 -
Vifa2g01161 1218 Gene3D - 407 496 IPR036388 -
Vifa2g01161 1218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 136 422 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01161 Vifa-Chr2 311617288 311620944 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01161 141 662 WRKY Transcription Factor Family AT5G45050 23.917 1.01e-10 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01161 - - tpra:123913254 1535.78