Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01153 ATGCAACCCAAGTCTGAAACTGCAAATCAAGTTAGGTCGGATCCTCATTCCTTACCGGCCGGTGGTGTTGGTGGTGTTTACGCTGAACCTTGGTGGCGTGGTGTTGGATACAATCCTGTAGGGCAAACAATGTCTGGTGCCAATTCATCCTCTCTTGACTGCCGCAATGGTGATTCAGAATCCAATGAGGAAGGGCAATCTATGTCCAATAGTGGAATGAATGAGGAAGAGGATGATGCTGCTAAGGATTCACAGCCTGCTGCTGCTCCTAATCAATCAGGAAATTATGGGCAAGAACAACAAGGAATGCAGCACACTGCATCATCTGCGCTTATCGTTCATGAAGAAGGCCTCACACAAACTCCTCCGATGGAGCTTGTTGGTCATTCAATTGCATGTGCTACAAATCCTTATCAGGATCCATATTATGGGGGCATGATGGCCGCTTATGGTCACCAGCAGTTGGCATATCATCCTTTTATGGGAATGCCTCATCCCAGAATGCCTTTGCCCCTCGAGATGGCTCAGGAACCTGTTTATGTGAATGCCAAACAATACCAAGGAATTCTGAGGCGGAGACAAGCTCGTGCTAAAGCAGAGCTTGAAAGGAAGCTCATAAAATCTAGAAAGCCATATCTTCATGAATCTAGACATCAGCATGCTATGAGAAGGGCAAGAGGCACAGGAGGACGATTTGCAAAGAAAACTGATGGTGAAGGCTCAAACAACTCAGGAAAGGATAATGGCTCTGGTCCAGTCCTGTCATCACAGTCAATTAGTTCATCTGGTTCAGAACCCTTACCTTCAGACTCTGCCGAAACCTGGAATTCTCCCAACATGCAACAAGATGCAAGAGTAACAAATGAAAACGGCGGTGTCTCCTACCATAATAACAACAATGGTATGCAATCTTCAAGATATCAAGGTGAAAGAGTGGATGAAGGGGACTGTTCAGGGCAACTTCGTGGAAGCATCTCCTCGAACGAGGCATCACAGAGACGTCTAGCTATTCAGTAG 1017 0.4631 MQPKSETANQVRSDPHSLPAGGVGGVYAEPWWRGVGYNPVGQTMSGANSSSLDCRNGDSESNEEGQSMSNSGMNEEEDDAAKDSQPAAAPNQSGNYGQEQQGMQHTASSALIVHEEGLTQTPPMELVGHSIACATNPYQDPYYGGMMAAYGHQQLAYHPFMGMPHPRMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHAMRRARGTGGRFAKKTDGEGSNNSGKDNGSGPVLSSQSISSSGSEPLPSDSAETWNSPNMQQDARVTNENGGVSYHNNNNGMQSSRYQGERVDEGDCSGQLRGSISSNEASQRRLAIQ 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01153 338 Gene3D - 175 237 - -
Vifa2g01153 338 ProSiteProfiles NF-YA/HAP2 family profile. 175 235 IPR001289 GO:0003700|GO:0006355
Vifa2g01153 338 MobiDBLite consensus disorder prediction 1 106 - -
Vifa2g01153 338 ProSitePatterns NF-YA/HAP2 subunit signature. 180 200 IPR018362 GO:0003677|GO:0016602
Vifa2g01153 338 MobiDBLite consensus disorder prediction 210 229 - -
Vifa2g01153 338 MobiDBLite consensus disorder prediction 237 307 - -
Vifa2g01153 338 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 177 232 IPR001289 GO:0003700|GO:0006355
Vifa2g01153 338 SMART cbf3 174 235 IPR001289 GO:0003700|GO:0006355
Vifa2g01153 338 MobiDBLite consensus disorder prediction 41 74 - -
Vifa2g01153 338 PRINTS CCAAT-binding transcription factor subunit B signature 209 232 IPR001289 GO:0003700|GO:0006355
Vifa2g01153 338 PRINTS CCAAT-binding transcription factor subunit B signature 178 200 IPR001289 GO:0003700|GO:0006355
Vifa2g01153 338 MobiDBLite consensus disorder prediction 320 338 - -
Vifa2g01153 338 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 25 289 IPR001289 GO:0003700|GO:0006355
Vifa2g01153 338 MobiDBLite consensus disorder prediction 208 338 - -
Vifa2g01153 338 MobiDBLite consensus disorder prediction 86 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01153 Vifa-Chr2 310348473 310350724 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01153 26 277 CCAAT-HAP2 Transcription Factor Family AT5G12840 56.250 4.00e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vifa2g01153 CBFB_NFYA 1.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01153 K08064 - gmx:100808378 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01153 2 310348473 310350724 Vifa2g01153 2 310348473 310350724 ECH