Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01142 ATGGCTGGAGGAAATTCAACCCTCCCCATCTGTTTCTTCAAGATTATTCTTCAAACCAATCTTCAAACTATTAAAATACCAAATAAGTTTACAAGGAGTCATGGTGTTGGTCTACCAAACCCAATGTTCATCAAGCCTCCTGATGGCAGTGCATGGAAAGTGTTTTGGAGAAACATCAATGGTGAGATTTGGTTTGAAAAGGGTTGGAGTATTTTTACTCAAAATTACTCTCTACAACATGGTTGTTTAGTGGTGTTTAAATATAAAGAGGGAACATCAGAGTTAGATGTAGTAATACTTGGCCAGAATGCACTTGAAATTGACTATGATTCTAAGTGCGACACTGTTGATATTTTGAATGTTGATGATAGTGATGATGAATCAGATGAGATTTTGAATGAATGGCTTAATAGGAAGAAGGTTAGACAGAAGTCGCCATTAGTTTCTACTAGAGCACATAAAAAAGTTAGAGGTGATATTGAGAAGAATACAGTACGGCCGTATGTACCAAATTTACAAGGGGTTATTGAGAACAAGAAGACGAATGTGATGATTCAGATTGGTGAAAGATCCTGGAATCTGAAGTTGCTTCCTTGTTCCAATAATATAAGGAGCCGTCGGCTTTCGGCTGGTTGGTCCTTGTTTGCAAGGGAAAGTGGTTTGCAGCAGGGAGATGTTTGCATCTTTGAACTCATAAACAAGAAAGATTTAGTTTTTAAAGTTCATGTTTTTTAA 735 0.3701 MAGGNSTLPICFFKIILQTNLQTIKIPNKFTRSHGVGLPNPMFIKPPDGSAWKVFWRNINGEIWFEKGWSIFTQNYSLQHGCLVVFKYKEGTSELDVVILGQNALEIDYDSKCDTVDILNVDDSDDESDEILNEWLNRKKVRQKSPLVSTRAHKKVRGDIEKNTVRPYVPNLQGVIENKKTNVMIQIGERSWNLKLLPCSNNIRSRRLSAGWSLFARESGLQQGDVCIFELINKKDLVFKVHVF 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01142 244 Gene3D - 136 244 IPR015300 -
Vifa2g01142 244 CDD B3_DNA 11 100 IPR003340 GO:0003677
Vifa2g01142 244 PANTHER B3 DOMAIN-CONTAINING 10 243 - -
Vifa2g01142 244 SUPERFAMILY DNA-binding pseudobarrel domain 10 110 IPR015300 -
Vifa2g01142 244 SMART B3_2 12 103 IPR003340 GO:0003677
Vifa2g01142 244 SMART B3_2 147 242 IPR003340 GO:0003677
Vifa2g01142 244 ProSiteProfiles B3 DNA-binding domain profile. 9 103 IPR003340 GO:0003677
Vifa2g01142 244 SUPERFAMILY DNA-binding pseudobarrel domain 179 244 IPR015300 -
Vifa2g01142 244 ProSiteProfiles B3 DNA-binding domain profile. 190 244 IPR003340 GO:0003677
Vifa2g01142 244 Pfam B3 DNA binding domain 177 244 IPR003340 GO:0003677
Vifa2g01142 244 Pfam B3 DNA binding domain 20 97 IPR003340 GO:0003677
Vifa2g01142 244 Gene3D - 8 104 IPR015300 -
Vifa2g01142 244 CDD B3_DNA 183 244 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01142 Vifa-Chr2 305413723 305414905 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01142 12 146 B3 DNA Binding Superfamily AT4G01580 29.197 2.25e-16 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa2g01142 B3 3.4e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01142 - - tpra:123887513 302.753