Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01141 ATGGCTGGAGGAAATTCAACCCTCCCCATCTGTTTCTTCAAGATTATTCTTCAAACCAATCTTCAAACTATTAAAATACCAAATAAGTTTACAAGGAGTCATGGTGTTGGTCTACCAAACCCAATGTTCATCAAGCCTCCTGATGGCAGTGCATGGAAAGTGTTTTGGAGAAACATCAATGAGGGAACATCAGAGTTAGATGTAGTAATACTTGGCCAGAATGCACTTGAAATTGACTATGATTCTAAGTGCGACACTGTTGATATTTTGAATGTTGATGATAGTGATGATGAATCAGATGAGATTTTGAATGAATGGCTTAATAGGAAGAAGGTTAGACAGAAGTCGCCATTAGTTTCTACTAGAGCACATAAAAAAGTTAGAGGTGATATTGAGAAGAATACAGTACGGCCGTATGTACCAAATTTACAAGGGGTTATTGAGAACAAGAAGACGAATGTGATGATTCAGATTGGTGAAAGATCCTGGAATCTGAAGTTGCTTCCTTGTTCCAATAATATAAGGAGCCGTCGGCTTTCGGCTGGTTGGTCCTTGTTTGCAAGGGAAAGTGGTTTGCAGCAGGGAGATGTTTGCATCTTTGAACTCATAAACAAGAAAGATTTAGTTTTTAAAGTTCATGTTTTTTAA 648 0.3781 MAGGNSTLPICFFKIILQTNLQTIKIPNKFTRSHGVGLPNPMFIKPPDGSAWKVFWRNINEGTSELDVVILGQNALEIDYDSKCDTVDILNVDDSDDESDEILNEWLNRKKVRQKSPLVSTRAHKKVRGDIEKNTVRPYVPNLQGVIENKKTNVMIQIGERSWNLKLLPCSNNIRSRRLSAGWSLFARESGLQQGDVCIFELINKKDLVFKVHVF 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01141 215 PANTHER B3 DOMAIN-CONTAINING 61 214 - -
Vifa2g01141 215 Pfam B3 DNA binding domain 148 215 IPR003340 GO:0003677
Vifa2g01141 215 SUPERFAMILY DNA-binding pseudobarrel domain 10 64 IPR015300 -
Vifa2g01141 215 CDD B3_DNA 154 215 IPR003340 GO:0003677
Vifa2g01141 215 ProSiteProfiles B3 DNA-binding domain profile. 161 215 IPR003340 GO:0003677
Vifa2g01141 215 Gene3D - 107 215 IPR015300 -
Vifa2g01141 215 SUPERFAMILY DNA-binding pseudobarrel domain 150 215 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01141 Vifa-Chr2 305413723 305414905 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01141 154 215 REM Transcription Factor Family AT1G49480 33.871 3.18e-08 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa2g01141 B3 2.6e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01141 - - tpra:123887513 233.417