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Gene search
Sequence information
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Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Vifa2g01140
ATGGCTGGAGGAAATTCAACCCTCCCCGTCTGTTTCTTCAAGTTTATTCTTCAAACCAATCTTCAAACTATTAAAATACCAAATAAGTTTACAAGGAGTCATGGTGTTGGTCTACCAAACCCAATGTTCATCAAGCCTCCTGATGGCACTAAATGGAAAATGTTTTGGAAAAACATCAATGGTGAGATTTGGTTTGAAAAGGGTTGGAGTATTTTTACTCAAAATTACTCTCTACAACATGGTTGTTTAGTGGTGTTTAAATATAAAGAGGGAACATCAGAGTTAGATGTAGTAATACTTGGCCAGAATGCACTTGAAATTGACTATGATTCTAAGTGCGACACTGTTGATATTTTGAATGTTGATGATAGTGATGATGAATCACATGAGATTTTAAATGAATGGCTTAATAGGAAGAAGGTTATACAGAAGTCGCCATTAGTTTCTATTAGAGCACATAAAAAAGTTAGAGGTGAGATTGAGAAGAATAGTGAAAGAACTTCATCATTGAATAGGCCAAAGGAATGTAGAGCTCGGGAAGTTGCTGAAGAATTTATCTCAAACAATCCCTTTTTCACAATTTGGATCAAGCCTTCTAATCTGGCAGCAAATCGGCTGTCTGTACCAAATTTACAAGGGGTTATTGAGAACAAGAAGACGAATGTGATGATTCAGATTGGTGAAAGATCCTGGAACCTGAATTTGCTTCCTAGTTACAATAATATAAGGAACCGTCGGCTTTCGGCTGGTTGGTCCTTGTTTGCAAGGGAAAGTGGTTTGCAGCCGGGAGATGTTTGCATCTTTGAACTCATAAACAAGAAAGATTTAGTTTTTAAAGTTCATGTTTTTTAA
852
0.365
MAGGNSTLPVCFFKFILQTNLQTIKIPNKFTRSHGVGLPNPMFIKPPDGTKWKMFWKNINGEIWFEKGWSIFTQNYSLQHGCLVVFKYKEGTSELDVVILGQNALEIDYDSKCDTVDILNVDDSDDESHEILNEWLNRKKVIQKSPLVSIRAHKKVRGEIEKNSERTSSLNRPKECRAREVAEEFISNNPFFTIWIKPSNLAANRLSVPNLQGVIENKKTNVMIQIGERSWNLNLLPSYNNIRNRRLSAGWSLFARESGLQPGDVCIFELINKKDLVFKVHVF
283
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Annotation information
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Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Vifa2g01140
283
CDD
B3_DNA
11
100
IPR003340
GO:0003677
Vifa2g01140
283
ProSiteProfiles
B3 DNA-binding domain profile.
9
103
IPR003340
GO:0003677
Vifa2g01140
283
CDD
B3_DNA
190
283
IPR003340
GO:0003677
Vifa2g01140
283
Gene3D
-
7
104
IPR015300
-
Vifa2g01140
283
Gene3D
-
171
283
IPR015300
-
Vifa2g01140
283
Pfam
B3 DNA binding domain
20
97
IPR003340
GO:0003677
Vifa2g01140
283
Pfam
B3 DNA binding domain
191
283
IPR003340
GO:0003677
Vifa2g01140
283
SMART
B3_2
12
103
IPR003340
GO:0003677
Vifa2g01140
283
SMART
B3_2
191
281
IPR003340
GO:0003677
Vifa2g01140
283
SUPERFAMILY
DNA-binding pseudobarrel domain
11
110
IPR015300
-
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Duplication type information
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Gene
Chromosome
Start
End
Duplicated_type
Vifa2g01140
Vifa-Chr2
305397966
305399152
Tandem
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Functional genes information
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Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Vifa2g01140
8
283
B3 DNA Binding Superfamily
AT3G18990
25.588
5.39e-23
95.5
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Transcription factors information
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Regulatory Factors
Family
Gene
Hmm_acc
Hmm_name
E_value
Clan
TF
B3
Vifa2g01140
B3
4.4e-10
CL0405
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Pathway information
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Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Vifa2g01140
-
-
tpra:123887513
362.844
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