Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01140 ATGGCTGGAGGAAATTCAACCCTCCCCGTCTGTTTCTTCAAGTTTATTCTTCAAACCAATCTTCAAACTATTAAAATACCAAATAAGTTTACAAGGAGTCATGGTGTTGGTCTACCAAACCCAATGTTCATCAAGCCTCCTGATGGCACTAAATGGAAAATGTTTTGGAAAAACATCAATGGTGAGATTTGGTTTGAAAAGGGTTGGAGTATTTTTACTCAAAATTACTCTCTACAACATGGTTGTTTAGTGGTGTTTAAATATAAAGAGGGAACATCAGAGTTAGATGTAGTAATACTTGGCCAGAATGCACTTGAAATTGACTATGATTCTAAGTGCGACACTGTTGATATTTTGAATGTTGATGATAGTGATGATGAATCACATGAGATTTTAAATGAATGGCTTAATAGGAAGAAGGTTATACAGAAGTCGCCATTAGTTTCTATTAGAGCACATAAAAAAGTTAGAGGTGAGATTGAGAAGAATAGTGAAAGAACTTCATCATTGAATAGGCCAAAGGAATGTAGAGCTCGGGAAGTTGCTGAAGAATTTATCTCAAACAATCCCTTTTTCACAATTTGGATCAAGCCTTCTAATCTGGCAGCAAATCGGCTGTCTGTACCAAATTTACAAGGGGTTATTGAGAACAAGAAGACGAATGTGATGATTCAGATTGGTGAAAGATCCTGGAACCTGAATTTGCTTCCTAGTTACAATAATATAAGGAACCGTCGGCTTTCGGCTGGTTGGTCCTTGTTTGCAAGGGAAAGTGGTTTGCAGCCGGGAGATGTTTGCATCTTTGAACTCATAAACAAGAAAGATTTAGTTTTTAAAGTTCATGTTTTTTAA 852 0.365 MAGGNSTLPVCFFKFILQTNLQTIKIPNKFTRSHGVGLPNPMFIKPPDGTKWKMFWKNINGEIWFEKGWSIFTQNYSLQHGCLVVFKYKEGTSELDVVILGQNALEIDYDSKCDTVDILNVDDSDDESHEILNEWLNRKKVIQKSPLVSIRAHKKVRGEIEKNSERTSSLNRPKECRAREVAEEFISNNPFFTIWIKPSNLAANRLSVPNLQGVIENKKTNVMIQIGERSWNLNLLPSYNNIRNRRLSAGWSLFARESGLQPGDVCIFELINKKDLVFKVHVF 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01140 283 CDD B3_DNA 11 100 IPR003340 GO:0003677
Vifa2g01140 283 ProSiteProfiles B3 DNA-binding domain profile. 9 103 IPR003340 GO:0003677
Vifa2g01140 283 CDD B3_DNA 190 283 IPR003340 GO:0003677
Vifa2g01140 283 Gene3D - 7 104 IPR015300 -
Vifa2g01140 283 Gene3D - 171 283 IPR015300 -
Vifa2g01140 283 Pfam B3 DNA binding domain 20 97 IPR003340 GO:0003677
Vifa2g01140 283 Pfam B3 DNA binding domain 191 283 IPR003340 GO:0003677
Vifa2g01140 283 SMART B3_2 12 103 IPR003340 GO:0003677
Vifa2g01140 283 SMART B3_2 191 281 IPR003340 GO:0003677
Vifa2g01140 283 SUPERFAMILY DNA-binding pseudobarrel domain 11 110 IPR015300 -
Vifa2g01140 283 PANTHER B3 DOMAIN-CONTAINING 11 282 - -
Vifa2g01140 283 SUPERFAMILY DNA-binding pseudobarrel domain 187 283 IPR015300 -
Vifa2g01140 283 ProSiteProfiles B3 DNA-binding domain profile. 191 283 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01140 Vifa-Chr2 305397966 305399152 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01140 8 283 B3 DNA Binding Superfamily AT3G18990 25.588 5.39e-23 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa2g01140 B3 4.4e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01140 - - tpra:123887513 362.844