Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01135 ATGGCGCCAATGCTCAGTTTCACCGGCCTCCCCTCCGCCCGGCCACTCCAATTGCCCGATGACGGTTCCACCTCCGGTATCTCAAATCGCCGCATGGTTTCCGTCCGAGCCGCAGCAACAGTAACCGACACACGGAGAGCAGCTACTAGTCTCTACGAAGTGCTACGAATCAAGCCAGGAGCATCTCATTCGGAGATCAAATCGGCTTACCGAAGTCTGGCGAAGGTTTACCATCCCGACGCGGCGGCGCAACGGTTACCGGAGTGTGACGACAGAGACTTCATCGAGATCCGCAAAGCTTACGAGACGCTTTCAGATCCATCAGCGAGAGCAGTTTACGACATGTCGTTGAGGAGTAGGCAGTTTTCGGGTTCGGTAACACTGAAACGGTGTCCGGGATATACAAGATGGGAAACAGACCAATGCTGGTAG 432 0.5509 MAPMLSFTGLPSARPLQLPDDGSTSGISNRRMVSVRAAATVTDTRRAATSLYEVLRIKPGASHSEIKSAYRSLAKVYHPDAAAQRLPECDDRDFIEIRKAYETLSDPSARAVYDMSLRSRQFSGSVTLKRCPGYTRWETDQCW 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01135 143 SUPERFAMILY Chaperone J-domain 47 119 IPR036869 -
Vifa2g01135 143 ProSiteProfiles dnaJ domain profile. 50 117 IPR001623 -
Vifa2g01135 143 ProSitePatterns Nt-dnaJ domain signature. 94 113 IPR018253 -
Vifa2g01135 143 PANTHER CHAPERONE PROTEIN DNAJ 11, CHLOROPLASTIC-LIKE 25 143 - -
Vifa2g01135 143 Pfam DnaJ domain 51 114 IPR001623 -
Vifa2g01135 143 CDD DnaJ 52 106 IPR001623 -
Vifa2g01135 143 SMART dnaj_3 49 109 IPR001623 -
Vifa2g01135 143 Gene3D DnaJ domain 35 129 IPR036869 -
Vifa2g01135 143 PRINTS DnaJ domain signature 89 109 IPR001623 -
Vifa2g01135 143 PRINTS DnaJ domain signature 52 70 IPR001623 -
Vifa2g01135 143 PRINTS DnaJ domain signature 70 85 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01135 Vifa-Chr2 304162940 304163371 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01135 42 114 C2H2 Transcription Factor Family AT1G74250 43.421 7.36e-08 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01135 - - psat:127084677 205.682