Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01133 ATGAAGATCACTGTCATGACTGCTGATGAACAAATTCTCAACTTGGATGTCGATCCCAACGAATCTGTTGAAAACGTTAAAGCCTTGCTTGAGGTTGAGACAGGTGTGCCTATACAGCAGCAGCAGATTCTTTTCAATGGGAATGAGGTTAACAATTCTCAGAAATTGAGTGCCATTGGTGTTAAGGATGATGATTTGCTAATGATGACGGTCTCTAGGGCCGGTGCCGGTGCTGTTGCTTCTAGTGGTTCTGCGAATGATTTGAGCATCAATACTGATGGATCTGCTGTAAACCCTGGTGCTTTTCAACAGCACTTTAGACGCGATTCTAATTTGATGGGCCGGCTCTTCCAGAGTGACCCGGAGTTTGCACAAGTTATTCTGGGGAATGATCTCAATAAAATCCAGGAAATTTTGCGATTGCGTCATCGCCAAAGAGATCAATTACGGCGTCAGAAAGAAGAAGAGATGGCTCTTCTTTATGCCGATCCTTTTGATGTTGAAGCACAAAAGAAGATTGAAGCTGCCATCCGCCAGAAAGGAATTGATGAAAATTGGGAAGCTGCACTTGAACATAATCCCGAAGGTTTTGCAAGAGTGGTCATGTTGTATGTTGACATGGAGGTTAATGGCGTACCAATGAAGGCATTTGTTGATAGTGGAGCACAGTCTACCATTATATCAAAAACCTGCGCTGAGCGTTTAGGATTACTGAGACTTTTAGATCAGCGTTACAAAGGAGTTGCTCACGGAGTTGGCCAAACTGAAATCTTGGGTAGAATACATGTAGCTCCAATCAAGATTGGGAATATATTTTACCCTTGTTCATTCTTAGTGCTGGATTCCCCCAACATGGAGTTTCTCTTTGGGCTGGATATGCTTCGAAAGCATCAGTGTATAATTGATTTAAAAGAAAACGTTTTGCGAGTTGGTGGAGGAGAAGTTTCAGTGCCATTTTTGCAAGAGAAAGACATTCCGTCTCGGTATTTAGACGAGGAAAAGTATTCCAAGGAAGCTTCAAGCTCAGGAGTCCCTCCCCAAGTTACATCAGGGAGCAATAATTCATCACAAGGAGGTGCTTCTGGTGGCGGGTCTAAGGATTCTGAATTTGAAAGCAAAGTTGCAAAGCTTGTTGAGCTAGGATTTGAAAGACAAGCAGTTATACAAGCTCTTCAACTATTCAATGGCAATGAGGAACAAGCAGCTGGGTTTCTTTTTGGCTGA 1224 0.4289 MKITVMTADEQILNLDVDPNESVENVKALLEVETGVPIQQQQILFNGNEVNNSQKLSAIGVKDDDLLMMTVSRAGAGAVASSGSANDLSINTDGSAVNPGAFQQHFRRDSNLMGRLFQSDPEFAQVILGNDLNKIQEILRLRHRQRDQLRRQKEEEMALLYADPFDVEAQKKIEAAIRQKGIDENWEAALEHNPEGFARVVMLYVDMEVNGVPMKAFVDSGAQSTIISKTCAERLGLLRLLDQRYKGVAHGVGQTEILGRIHVAPIKIGNIFYPCSFLVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVGGGEVSVPFLQEKDIPSRYLDEEKYSKEASSSGVPPQVTSGSNNSSQGGASGGGSKDSEFESKVAKLVELGFERQAVIQALQLFNGNEEQAAGFLFG 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01133 407 CDD Ubl_Ddi1_like 1 71 IPR033882 -
Vifa2g01133 407 CDD RP_DDI 187 310 IPR019103 GO:0004190|GO:0006508
Vifa2g01133 407 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 365 407 IPR015940 -
Vifa2g01133 407 SMART uba_6 370 407 IPR015940 -
Vifa2g01133 407 SUPERFAMILY Ubiquitin-like 1 85 IPR029071 -
Vifa2g01133 407 Gene3D Acid Proteases 181 327 IPR021109 -
Vifa2g01133 407 Pfam Aspartyl protease 180 302 IPR019103 GO:0004190|GO:0006508
Vifa2g01133 407 CDD UBA_scDdi1_like 371 406 - -
Vifa2g01133 407 PRINTS Ubiquitin signature 32 52 IPR019956 -
Vifa2g01133 407 PRINTS Ubiquitin signature 11 31 IPR019956 -
Vifa2g01133 407 Gene3D - 1 84 - -
Vifa2g01133 407 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Vifa2g01133 407 Pfam Ubiquitin family 3 72 IPR000626 GO:0005515
Vifa2g01133 407 Gene3D - 338 407 - -
Vifa2g01133 407 Coils Coil 135 155 - -
Vifa2g01133 407 MobiDBLite consensus disorder prediction 340 363 - -
Vifa2g01133 407 SUPERFAMILY Acid proteases 187 303 IPR021109 -
Vifa2g01133 407 FunFam DNA damage inducible 1 homolog 2 180 327 - -
Vifa2g01133 407 SUPERFAMILY UBA-like 366 407 IPR009060 GO:0005515
Vifa2g01133 407 SMART ubq_7 1 72 IPR000626 GO:0005515
Vifa2g01133 407 Pfam UBA/TS-N domain 371 404 IPR015940 -
Vifa2g01133 407 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 405 - -
Vifa2g01133 407 MobiDBLite consensus disorder prediction 336 368 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01133 1 76 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 27.273 2.85e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01133 K11885 - gmx:100779464 670.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01133 2 304115539 304118769 Vifa2g01133 2 304115539 304118769 ECH