Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01130 ATGAGTGATTCTCTTTACAAAGTTGATACAACTCCACGTCTTGCTCAATGGAGAATCGAAAACTTGGCTTCTTGCACTTATCGCAAATCAGATCCTTTCAAGATTGGAAACTGGAACTGGTATTTGTCGGTGGAGAAACACAAGGTTGTGTTTGTTAAATTGTTTCCTGAAATATCAAATGTCACAAGAGACAATCCTCCAATTGCGTCTTTTATTATGCGTGTGGTGAGTTCTGCTTTTGGAGATCGCAAAGCTCTCACACATCCAGAGATTAAGGACAAAGTGATCAAGAGCAACGAGGATTTTGTTTGGTCACTTGAGGTTCCACTGTCTGGAAAATTCATTATTGATGTTGATTTCCTTGATTTGAAGATTGCATCCCCAGATGGCGGAGAGCCATGCTCCATATGGGGCGGTGAAGGATTTACACAAGAGAGATCGAATGCAAAAGCGCTAGGGTCGCTTGGTAAAATGCTAAGAAAAGGAATTCACACAGATATAGCCATCAATGCTTCTGATGGAAGTATAGGAGTTCATAGAGCTGTTCTTGCTTCTCGGTCACCTGTCTTCCAAAGCATGTTCTCGCACGATCTTAAAGAGAAAGAGTTGTCAACCATAAACATCACAGACATGTCAATCGAAACATCTGACAAGTACGACATATCTGATTTGAGAGAGGCCATTCATGAAAGTCTTCTAGAAGATATTGATACGAAGAATGTACTCGAGAGGTTGCAAAACGCGTCGCTATACCGGTTGACGAAGCTGAAAATGAGCTGTATTCAGTATCTTGTTAAATTCGGTAAAATATTTGAAATTCGGGATGATTTCAATACCTTTCTCCAAAGTGCAGACAGGGATCTCATTTCTGAAGTCTTTGCCGAAGTTCTTGGAGCCTGGAAAGGATATTGA 912 0.4079 MSDSLYKVDTTPRLAQWRIENLASCTYRKSDPFKIGNWNWYLSVEKHKVVFVKLFPEISNVTRDNPPIASFIMRVVSSAFGDRKALTHPEIKDKVIKSNEDFVWSLEVPLSGKFIIDVDFLDLKIASPDGGEPCSIWGGEGFTQERSNAKALGSLGKMLRKGIHTDIAINASDGSIGVHRAVLASRSPVFQSMFSHDLKEKELSTINITDMSIETSDKYDISDLREAIHESLLEDIDTKNVLERLQNASLYRLTKLKMSCIQYLVKFGKIFEIRDDFNTFLQSADRDLISEVFAEVLGAWKGY 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01130 303 SUPERFAMILY POZ domain 150 265 IPR011333 -
Vifa2g01130 303 SMART BTB_4 165 268 IPR000210 GO:0005515
Vifa2g01130 303 CDD BTB_POZ_ZBTB_KLHL-like 164 215 - -
Vifa2g01130 303 Pfam BTB/POZ domain 157 266 IPR000210 GO:0005515
Vifa2g01130 303 PANTHER OS08G0495500 PROTEIN-RELATED 6 215 IPR044714 -
Vifa2g01130 303 ProSiteProfiles BTB domain profile. 165 214 IPR000210 GO:0005515
Vifa2g01130 303 Gene3D Potassium Channel Kv1.1; Chain A 143 214 IPR011333 -
Vifa2g01130 303 Gene3D Potassium Channel Kv1.1; Chain A 215 266 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01130 Vifa-Chr2 304070633 304072387 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vifa2g01130 BTB 9e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01130 K10523 - gmx:100790186 502.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01130 2 304070633 304072387 Vifa2g01130 2 304070633 304072387 ECH
Vifa2g01130 2 304070633 304072387 Vifa1g00917 1 154539556 154542564 PCT