Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01127 ATGGTTCAATGCTTAAAAGAAAAAGGGCATGTAGTTGCTGTAACAGGAGACGATACAAATGATGCACCAGCATTGAAAGAAGCTGATATTGGACTTTCAATGGGAATTCAAGGTACAGAAGTTGCAAAAGAGAGTTCAGATATTGTTATATTAGATGACAATTTTGCATCTATAGTAACAGTTTTAAATTGGGGAAGATGTGTTTACAACAACATCCAAAAATTCATTCAATTTCAATTAACAGTGAATGTAGCTGCACTTGTTATCAATTTTGTAGCAGCAGTTTCAGCAGGTGAAGTTCCATTAACAGCAGTTCAATTATTATGGGTCAATTTGATTATGGATACATTAGGTTCTTTGGCTCTTGCAACTGAAAACCCTACTAAGGAATTGATGGATCAAAAACCTGTGGGTAGAACAAAACCTCTTATCACTAACATTATGTGGAGGAATCTTCTGTCACAAGCTATCTACCAAATAGTAATTTTGTTGACTCTACAATTTAAAGGGGAAAATATTTTTGGTGTGACATCAAAGGTAAATGACACATTGATTTTTAATACATTTGTTCTTTGTCAAGTGTTTAATGAGTTCAATGCAAGGAAGTTGGAGAAGAAGAATGTTTTTGAAGGGATATTTAGAAGCAAATTGTTTGTGGGAATAGTTGGTGTGACATTGGTGCTTCAAGTAGTGATGGTTGAGTTTTTGAAGAAATTTGCTGATACAGAGAGATTGAATTGGAGAGAATGGATTATTTGTATTGGTCTTGCTTCTGCTTCTTGGCCAATTGGTTTTGTTGTGAAGTTGATACCAGTTTCAGATAAACCATTACTTGATTTTCTGAGTGTGAAGAAGAGATTATGA 864 0.3426 MVQCLKEKGHVVAVTGDDTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFASIVTVLNWGRCVYNNIQKFIQFQLTVNVAALVINFVAAVSAGEVPLTAVQLLWVNLIMDTLGSLALATENPTKELMDQKPVGRTKPLITNIMWRNLLSQAIYQIVILLTLQFKGENIFGVTSKVNDTLIFNTFVLCQVFNEFNARKLEKKNVFEGIFRSKLFVGIVGVTLVLQVVMVEFLKKFADTERLNWREWIICIGLASASWPIGFVVKLIPVSDKPLLDFLSVKKRL 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01127 287 SUPERFAMILY Calcium ATPase, transmembrane domain M 65 272 IPR023298 -
Vifa2g01127 287 PRINTS P-type cation-transporting ATPase superfamily signature 15 34 - -
Vifa2g01127 287 PRINTS P-type cation-transporting ATPase superfamily signature 39 51 - -
Vifa2g01127 287 Gene3D - 27 274 - -
Vifa2g01127 287 PANTHER CATION TRANSPORTING ATPASE 1 273 - -
Vifa2g01127 287 FunFam Calcium-transporting ATPase 32 274 - -
Vifa2g01127 287 NCBIfam HAD-IC family P-type ATPase 1 96 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa2g01127 287 SUPERFAMILY HAD-like 2 73 IPR036412 -
Vifa2g01127 287 PRINTS H+-transporting ATPase (proton pump) signature 15 31 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa2g01127 287 PRINTS H+-transporting ATPase (proton pump) signature 47 72 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa2g01127 287 Pfam Cation transporting ATPase, C-terminus 100 270 IPR006068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01127 Vifa-Chr2 303219048 303219911 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01127 1 287 Primary Pumps ATPases AT3G63380 77.003 1.02e-157 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01127 K01537 - gmx:100793918 488.804