Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01120 ATGATTTCGCCGTTGGTGTTCCTTCCGATCTCTACGCATATCATCGCTCCACTGGAAATTCCCTCTGCCCCTACCCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTACCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCGGATACCGTCATTTTTTCTTCTCCAGGAAAAAAAGAGTCTGGGCCTTGTCTTAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGGAAGCTATTAACTCACCAACTAGCTAATCAGACGCAAGCCCCTCCTTGGGTGGATTCCTCCTTTCGCTCCTCAGCCTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTCCCCCTCCCAAGGGCAGTAAGAATGACTTATCTGTCAACTTTTCCAATATTACCCCTAAAAAACCAAACTCTGCGTTACGTAAAGTTGCCAGAGTACGCTTAACCTCTGGATTTGAAATCACTGCTTATATACCCGGTATTGGCCATAATTTACAAATACATTCTGTAGTTTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCTGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGTTGCCGCAGTAAAGGATCGTCGACAAGGGCGAGTTAAAGCAAGACGCGTGAGCGAATCGACTCATCAAGTTCCCATTGAAATAGGATCGACACAAGGAAAAGCACTTGCCATTCGTTGGTTATTAGCGGCATCCCGAAAACGTCTGGGTCGAAATATGGCTTTCAAATTAAGTTCCGAATTAGTGGATGCTGCCAAAGGCAGTGGTGATGCCATACGCAAAAAGGAAGAGACTCAGAGAATGGCGGAGGCAAATAGAATTCTTGCACATTTTCGTTAA 906 0.4724 MISPLVFLPISTHIIAPLEIPSAPTPPTDALRPIIPDNACILCLTAAAGTELADAYSPDTVIFSSPGKKESGPCLSPSVADHPLGPATDHRLGKLLTHQLANQTQAPPWVDSSFRSSAYGVLAAVSSCCPPPKGSKNDLSVNFSNITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQIHSVVLVRGGRVKDLPGVRYHIVRGTLDVAAVKDRRQGRVKARRVSESTHQVPIEIGSTQGKALAIRWLLAASRKRLGRNMAFKLSSELVDAAKGSGDAIRKKEETQRMAEANRILAHFR 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01120 301 SUPERFAMILY Ribosomal protein S7 220 296 IPR036823 -
Vifa2g01120 301 Pfam Ribosomal protein S7p/S5e 220 295 IPR023798 -
Vifa2g01120 301 CDD Ribosomal_S12 146 216 IPR005679 GO:0003735|GO:0006412|GO:0015935
Vifa2g01120 301 Pfam Ribosomal protein S12/S23 141 224 IPR006032 GO:0003735|GO:0005840|GO:0006412
Vifa2g01120 301 SUPERFAMILY Nucleic acid-binding proteins 141 222 IPR012340 -
Vifa2g01120 301 Gene3D - 126 214 IPR012340 -
Vifa2g01120 301 ProSitePatterns Ribosomal protein S12 signature. 149 156 IPR006032 GO:0003735|GO:0005840|GO:0006412
Vifa2g01120 301 Gene3D Ribosomal protein S7 domain 215 301 IPR036823 -
Vifa2g01120 301 NCBIfam 30S ribosomal protein S12 136 222 IPR005679 GO:0003735|GO:0006412|GO:0015935
Vifa2g01120 301 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 142 223 IPR006032 GO:0003735|GO:0005840|GO:0006412
Vifa2g01120 301 PRINTS Ribosomal protein S12 signature 183 200 IPR006032 GO:0003735|GO:0005840|GO:0006412
Vifa2g01120 301 PRINTS Ribosomal protein S12 signature 164 183 IPR006032 GO:0003735|GO:0005840|GO:0006412
Vifa2g01120 301 PRINTS Ribosomal protein S12 signature 148 163 IPR006032 GO:0003735|GO:0005840|GO:0006412
Vifa2g01120 301 PRINTS Ribosomal protein S12 signature 200 216 IPR006032 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01120 Vifa-Chr2 302218662 302221618 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01120 109 218 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 31.967 1.30e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01120 K02950 - soe:130461791 182.57