Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01114 ATGCCACAAGAGGTGTCAAAATCACAAAACTCATTTTTCTCATCTCCTTCAAAAAGAGGATTGAAAGGTCTAGTTTCTATGAACATCAAAGAGGAGGAGAGTTTCAATGATTATGATTTGGCTCACAGAAAAGCAGAAGAAGCAGGTTCAAGGCGCTACGAAGCCTCAGAATGGCTCCGTCAAATGGACAACGTCGCATCTTCCTTCCTACCTCCAAAACCCTCACAGCAACAGTTCTACCTCGCGCTTCGCAACGGTATCATTCTCTGCAACGTCCTCAACAGAGTCAATCCCGGTGCTGTTGTCAAAGTGGTGGACAATTCTGCACTTGCGGCTGCTTCTACGGTAGAAGGAGCCGCGCATTCCGCGATTCAGTATTTTGAGAACATGAGGAACTTTCTTTATGCTGTTAAGGATATGCAGTTACTGACTTTTGAAGCTTCTGATTTGGAGAAGGGGGGTTCATCGAATAAAGTTGTGGACTGCATTCTATGTTTGAAGGGATACTATGAATGGAAACTATCTGGGGGAGTTGGTGTTTGGAGGTATGGTGGAACTGTGAGAATTACTTCCTTACCAAAGAGGTCTCCTTCTTCCTCCATAGTTGGCAGTGAAAGTGCAGATGATTCACTGGATGAGTCTGAGTCATCGCAACTTCTTCAGGCTTATATTAGAGAGACAGATGGGATTGATGATCTGCCTTTGAATACAATGGTAATTGATGCCTTACTCAGCAAGGTAGTCAAAGATTTCTCATCTTTTCTTGTTTCTCAAGGCACAGAGCTTGGACTTTTCCTGAAGAAAATACTAAAAGGGGATATTGGTTGTCTCTCAAAGACAGAGTTTGTAGAAGCTATCTCACTATATCTTAATCAAAGAAGTATTTTGGCATCAAATGATTTCTCCAAATTCTGCATTTGTGGTGGCAAGCGTGATATTCTTCGACAAAATGTCAATTACTCTGCCAAATATTCTGAAGTAATCAATACTCAACAGAAACAACTTGAGACTGTGAAATACTTCTTTGAAGATACAAAACTCGAAGTCAAGCAAATTCAATCAGAGTGGGAACAAGAATTTAGTAGGCTAGAGCATCATATTAAGAGCCTTGAAGTGGCCTCCTCTTCTTACCACAAAGTCTTGGAAGAGAACCGTTTTCTTTACAACCAAGTACAAGACCTCAAAGGAGCAATTAGGGTTTATTGTAGAGTGAGACCCTTCTTAACGGGACAATCAAATGTGCAGTCTACTGTAGACTATATTGGAGAAAATGGAGACATGATGATTGTGAATCCCTTCAAGCAAGGAAAAGATGCAAGAAGGGTATTTTCATTCGATAAGGTGTTTGGAACAAGTGTAACACAAGAACAAATTTATGCTGACACTCAACCGTTGATCAGATCTGTTTTAGATGGTTATAATGTATGTGTCTTTGCATATGGACAGACCGGTTCTGGGAAGACATACACGATGAGTGGTCCCGATCTGTCAGCTGAAGAGACATGGGGTGTAAACTATAGGGCTTTACGTGATTTATTTTATATATCAAAGGAAAGATCAGATTCCATAAAATATGAAGTTTTCGTCCAGATGATTGAAATATACAATGAACAAGTGAGAGATTTATTAGTCAGTGATGGCTCTAACAGAAGATTAGATATACGAAACACTTCCCAGCTGAATGGCCTCAATGTGCCTGATGCATTTTTAGTTCCAGTTACTTGCACTCGAGATGTTCTAAATTTAATGAAAATTGGTCAGAAAAACCGTGCTGTAGGTGCTACAGCTCTAAATGAGAGAAGCAGTCGTTCTCATAGTGTTTTCACTGTTCATGTTCGAGGCAGGGAGTTAGTTTCTAAGTCCATTCTTAGGGGTTGTCTCCATCTCGTGGATTTGGCTGGTAGTGAGAGAGTTGACAAATCTGAGGCTGTTGGTGAGAGATTAAAGGAGGCCCAACATATAAATAGATCACTTTCAGCACTTGGGGATGTTATTTCTGCTTTGGCACAGAAAAGTCTACATATCCCTTACCGAAATAGCAAGCTCACACAAGTATTACAAGATTCTTTAGGAGGGCATGCAAAAACTTTGATGTTTGTTCATATTAATCCTGAACTTAATGCTATTGGGGAGACAATTAGTACACTCAAGTTTGCCGAGAGGGTTGCATCCATTGAACTTGGAGCTGCTCAATCTAATAAAGAAACTGGTGAAATTCGAGAACTGAAGGAAGAGGTATCAAGTCTCAAATTAGCATTGGAAAGAAAAGAAGCAGAACTGGAGCAGTGGAAAGCTGGGAATACTCGAAATGCTACAGAGTCTCCAAAACGAAGAGCTATTTCACCTTATCATTTACCCAAATATAGCACCAGTGGCAGCATTAAGCCTGAAACTAGTCAAAGACTCATTGATGATAGAAACATTGAGGCTAGAAGCTGCTCTTCGGGTAAACAAAGAAGGTCAAGGTTTCCCTCAGCATTTATGGACAAGGAGTCCATACCAAAAATGCCACTTCTCACTGAAGAAAAATTAGCGAGCTCAAGGAAAGGAAGATCACCTTCACCTCCAGTTAGAAGATCAACATCCACCGACAGAGGGTCAGTCATTAAAAGCAAGTTAAAAAATGAAACAACAGACAACCAGCCAGTATTGAAGCATCCATTTCCAGCTAGAGTACCTGTTAACAAATTTCTTGCCACAATGCCAATGGTTGCACCCCTTGAGAATAATGCAAGATTGCATGTGAATTCACCAGAGCCAGTAAAACTCGAAGAGGAACAATTCAAGCAAGCACTAACTGCTGTAAGACAAGGCGGTATTAGGAAAAGCAAGGTTGAAACTAAGGCTAAGGCCAAACATCATCTACCATCTCCCTTAAAGATTCAAAAGCCTGAGTTGATCCCGTTGTTTACTTCTGGCATCGAATATGCTGGTGAAAAGACAGTGGAGACACCTCCAAAGAGTAATCACTCTGAGCCCGAAAATGATCTTAGATTTATTGAATCTGCTGGTCGTGGTGCTTTGAATCACAATAAGATACGTCAGAACATATCAAGGAATTTTCAGAACCTTGAATCAAGAGGAATAGTGCAAGCGGAAGAGCCTTTATCAGCTAGAAAAGTTGAAAACAAACTTTTGAATGGTTCAGGTAGTAATCATAATGAAGGAAATAATACATCCATGCCTGAATTTAGAAGGAGCCGATCTACCCCTCGCAGAAAGTTTTTTGGTTTATCTTGA 3240 0.4046 MPQEVSKSQNSFFSSPSKRGLKGLVSMNIKEEESFNDYDLAHRKAEEAGSRRYEASEWLRQMDNVASSFLPPKPSQQQFYLALRNGIILCNVLNRVNPGAVVKVVDNSALAAASTVEGAAHSAIQYFENMRNFLYAVKDMQLLTFEASDLEKGGSSNKVVDCILCLKGYYEWKLSGGVGVWRYGGTVRITSLPKRSPSSSIVGSESADDSLDESESSQLLQAYIRETDGIDDLPLNTMVIDALLSKVVKDFSSFLVSQGTELGLFLKKILKGDIGCLSKTEFVEAISLYLNQRSILASNDFSKFCICGGKRDILRQNVNYSAKYSEVINTQQKQLETVKYFFEDTKLEVKQIQSEWEQEFSRLEHHIKSLEVASSSYHKVLEENRFLYNQVQDLKGAIRVYCRVRPFLTGQSNVQSTVDYIGENGDMMIVNPFKQGKDARRVFSFDKVFGTSVTQEQIYADTQPLIRSVLDGYNVCVFAYGQTGSGKTYTMSGPDLSAEETWGVNYRALRDLFYISKERSDSIKYEVFVQMIEIYNEQVRDLLVSDGSNRRLDIRNTSQLNGLNVPDAFLVPVTCTRDVLNLMKIGQKNRAVGATALNERSSRSHSVFTVHVRGRELVSKSILRGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSLHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPELNAIGETISTLKFAERVASIELGAAQSNKETGEIRELKEEVSSLKLALERKEAELEQWKAGNTRNATESPKRRAISPYHLPKYSTSGSIKPETSQRLIDDRNIEARSCSSGKQRRSRFPSAFMDKESIPKMPLLTEEKLASSRKGRSPSPPVRRSTSTDRGSVIKSKLKNETTDNQPVLKHPFPARVPVNKFLATMPMVAPLENNARLHVNSPEPVKLEEEQFKQALTAVRQGGIRKSKVETKAKAKHHLPSPLKIQKPELIPLFTSGIEYAGEKTVETPPKSNHSEPENDLRFIESAGRGALNHNKIRQNISRNFQNLESRGIVQAEEPLSARKVENKLLNGSGSNHNEGNNTSMPEFRRSRSTPRRKFFGLS 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01114 1079 SMART kinesin_4 395 733 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa2g01114 1079 Pfam Calponin homology (CH) domain 52 171 IPR001715 GO:0005515
Vifa2g01114 1079 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 398 762 IPR027417 -
Vifa2g01114 1079 PANTHER KINESIN-LIKE PROTEIN KLP-3 56 910 IPR027640 GO:0003777|GO:0007018
Vifa2g01114 1079 MobiDBLite consensus disorder prediction 1045 1065 - -
Vifa2g01114 1079 MobiDBLite consensus disorder prediction 1 20 - -
Vifa2g01114 1079 MobiDBLite consensus disorder prediction 1 17 - -
Vifa2g01114 1079 CDD CH_AtKIN14-like 51 167 - -
Vifa2g01114 1079 ProSiteProfiles Calponin homology (CH) domain profile. 49 171 IPR001715 GO:0005515
Vifa2g01114 1079 Coils Coil 732 766 - -
Vifa2g01114 1079 Gene3D - 41 171 IPR036872 -
Vifa2g01114 1079 MobiDBLite consensus disorder prediction 1045 1079 - -
Vifa2g01114 1079 MobiDBLite consensus disorder prediction 193 214 - -
Vifa2g01114 1079 Gene3D Kinesin motor domain 340 727 IPR036961 -
Vifa2g01114 1079 MobiDBLite consensus disorder prediction 799 816 - -
Vifa2g01114 1079 FunFam kinesin-like protein KIN-14F 392 766 - -
Vifa2g01114 1079 SUPERFAMILY Calponin-homology domain, CH-domain 45 199 IPR036872 -
Vifa2g01114 1079 MobiDBLite consensus disorder prediction 764 887 - -
Vifa2g01114 1079 SMART ch_5 51 169 IPR001715 GO:0005515
Vifa2g01114 1079 MobiDBLite consensus disorder prediction 853 882 - -
Vifa2g01114 1079 FunFam kinesin-like protein KIN-14F 41 171 - -
Vifa2g01114 1079 ProSiteProfiles Kinesin motor domain profile. 397 725 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa2g01114 1079 Pfam Kinesin motor domain 403 725 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa2g01114 1079 PRINTS Kinesin heavy chain signature 595 612 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa2g01114 1079 PRINTS Kinesin heavy chain signature 675 696 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa2g01114 1079 PRINTS Kinesin heavy chain signature 472 493 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa2g01114 1079 PRINTS Kinesin heavy chain signature 626 644 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01114 Vifa-Chr2 301581216 301591552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01114 388 725 Calmodulin-binding Proteins AT5G65930 42.442 8.56e-75 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01114 K10406 - gmx:100786466 1673.68