Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01100 ATGGTTTCATTTTCTTCAAATTATGCAATAGGAGAAAACAGCATGGCTAGTACTAGTACAAGTAGCTTCCAAAACATGCCTCAACCAACTACTATATCTCAATCTCAACCTTCTTTTATGACTAGAATGGCTATGAGGATATCAAGATCAAGATGGTTCACTTTTTTGAGAAGAGTGTTTCATTATCAAAATGGACCAAGATCTGATCTTGGTTCTAACCCTTTTAATTCTAGGACATGGATGATGTTAGAGTTGGTTGCTTTGTTGGTTCAAATTATAAGCACAACATTTACTTTGGTGGTTTCAAAGAGTGAGAAACCTGTTAGGCCTATGAGGGTGTGGGTTGTTGGTTATGATATTGGCTGTGTTCTTAATTTGTTGTTGCTTTGTGTTCGGTATTATCAAATTAGTTTGAGTCATGGCGGTGATGATACTCTTGGACTTTCTCATGATGTGGAACAACAAACAAACAATGAAGAAAACAGTGCATATAGGAGCACACATTTGATGAGCAAATGCAGAAGTTCACTAGAGCTATTCTTTGCAATATGGTTTGTGATGGGAAATGTTTGGTCATTTGACTCACGTTTTGGAACATTACAACAAGCTCCAAAACTCCAAATCCTATGCATAATCCTTCTTGTTTGGAATGCAATTTGTTATTCTTTTCCTTTTCTTCTCTTTTTGTTGCTTTGTTGTTGTGTTCCACTCATTACCACCCTCCTTGGTTATGACATGAACATGGGATCCTCTTCTAGAGGTGCTTCTGATGATCAAATCTCACAACTTCCATGTTGGAGATTTAAAGTTGCTCATGCCAAATTAGATCTTGACAATGATTCTCAATGCAGTGAAAGATTGATCCGCGATGAGCCGGAATGTTGCATATGTTTGGCCAAATACAAAGACAAAGAAGAAGTTAGGCAATTGCCTTGTTCACATATGTTCCATCTAAAATGTGTTGATCAATGGCTAAGGATTATATCATGCTGTCCTCTTTGTAAACAAGAATTACAAAGGTAG 1023 0.3695 MVSFSSNYAIGENSMASTSTSSFQNMPQPTTISQSQPSFMTRMAMRISRSRWFTFLRRVFHYQNGPRSDLGSNPFNSRTWMMLELVALLVQIISTTFTLVVSKSEKPVRPMRVWVVGYDIGCVLNLLLLCVRYYQISLSHGGDDTLGLSHDVEQQTNNEENSAYRSTHLMSKCRSSLELFFAIWFVMGNVWSFDSRFGTLQQAPKLQILCIILLVWNAICYSFPFLLFLLLCCCVPLITTLLGYDMNMGSSSRGASDDQISQLPCWRFKVAHAKLDLDNDSQCSERLIRDEPECCICLAKYKDKEEVRQLPCSHMFHLKCVDQWLRIISCCPLCKQELQR 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01100 340 SMART ring_2 294 334 IPR001841 -
Vifa2g01100 340 ProSiteProfiles Zinc finger RING-type profile. 294 335 IPR001841 -
Vifa2g01100 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 339 IPR013083 -
Vifa2g01100 340 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 16 338 - -
Vifa2g01100 340 Pfam RING-like zinc finger 293 321 IPR001841 -
Vifa2g01100 340 SUPERFAMILY RING/U-box 285 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01100 Vifa-Chr2 298084979 298087207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01100 39 338 C3H Transcription Factor Family AT4G26580 64.333 5.44e-135 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01100 - - gmx:100818715 526.939