Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01094 ATGAATCCACAGTTTAAATATTCCAAAGATCTAAATCCAAAGAGATTTTTGACCAGTCCATCTACTGGAGTGCTTAATGATGGCTATGATAATCTAAACTCAGATCTTATTCTGACAGTGAATTTGGTCTTGATCCATGTAGAGAAAAGTAGAAGATATACTGTCAAAGATCTCCTTGGCCACGGGACATTTGGACAAGTGGCCAAATGCTGGGATTCTGATACCAACAGTTTTGTTGCTGTGAAGATCATTAAAAATCAACCTGCGTATTATCAACAGGCGCTGGTTGAAGTAACTATTTTAACAACGTTAAATAAGAAGTACGATCCTGAGGATAAGCATCACATTGTTCGTATATTTGATTATTTTGTATATCAACGGCATTTGTGCATATGCTTTGAATTGCTGGACACAAACCTGTATGAGCTTATCAAAATGAATCATTTTAGGGGATTGTCACTTGGTATTGTTCAGCTGTTCTCTAAGCAGATTTTATGTGGACTGGCTCTATTAAAAGATGCTGGCATTATTCATTGTGATCTGAAGCCAGAAAACATCCTTTTATGTGCGAGCAGTGCGAATCAAACAGAAATAAAGATTATTGACTTTGGATCAGCATGCATGGAAAACCGCACTGTGTATTCCTATATTCAGAGTCGATACTATAGGTCTCCTGAGGTTCTTCTTGGATATCAATACACAACAGCTATTGATATGTGGTCCTTTGGGTGCATAGTGGCGGAATTATTTCTTGGATTACCATTATTCCCCGGGGCTTCAGAATTTGATCTTTTGAAAAGGATGATTGAAATAATTGGGTCACCTATAGAATCTAGGATAGACTTTGATTGTCCTCATCTTATGGGCCAGATACAATGTATCAATGAAGATGTTGAAAAGGACGATATAAATGATGAAATTCAAGAGGACGACATAAATGATAAAATTCAAGAGGACGACCTAAATGATAAAATTCAAGAGGACGACGTAGATGACGAATTTCAAGAGGACGACATAGATCTAGATGATGAATTTCAAGAGGAGGATATAGATGGTGAATTTCAAGAGGACGACGTAGATGAAGAATTTTTGGAGGATGACATATCTAACGAATTTCAAGAGGACGATCTGGATGCTTTACTCCTAGAAGACAAACTTGAATGA 1164 0.3703 MNPQFKYSKDLNPKRFLTSPSTGVLNDGYDNLNSDLILTVNLVLIHVEKSRRYTVKDLLGHGTFGQVAKCWDSDTNSFVAVKIIKNQPAYYQQALVEVTILTTLNKKYDPEDKHHIVRIFDYFVYQRHLCICFELLDTNLYELIKMNHFRGLSLGIVQLFSKQILCGLALLKDAGIIHCDLKPENILLCASSANQTEIKIIDFGSACMENRTVYSYIQSRYYRSPEVLLGYQYTTAIDMWSFGCIVAELFLGLPLFPGASEFDLLKRMIEIIGSPIESRIDFDCPHLMGQIQCINEDVEKDDINDEIQEDDINDKIQEDDLNDKIQEDDVDDEFQEDDIDLDDEFQEEDIDGEFQEDDVDEEFLEDDISNEFQEDDLDALLLEDKLE 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01094 387 ProSitePatterns Protein kinases ATP-binding region signature. 59 82 IPR017441 GO:0005524
Vifa2g01094 387 FunFam Dual specificity tyrosine-phosphorylation-regulated kinase 1A 16 132 - -
Vifa2g01094 387 Gene3D Phosphorylase Kinase; domain 1 17 133 - -
Vifa2g01094 387 PANTHER DUAL SPECIFICITY PROTEIN KINASE 25 277 - -
Vifa2g01094 387 SMART serkin_6 53 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01094 387 Gene3D Transferase(Phosphotransferase) domain 1 134 349 - -
Vifa2g01094 387 SUPERFAMILY Protein kinase-like (PK-like) 47 280 IPR011009 -
Vifa2g01094 387 MobiDBLite consensus disorder prediction 308 332 - -
Vifa2g01094 387 Pfam Protein kinase domain 53 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01094 387 ProSiteProfiles Protein kinase domain profile. 53 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01094 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 176 188 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01094 Vifa-Chr2 296735909 296741313 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01094 59 371 MAP Kinase Gene Family AT3G45640 32.432 3.82e-34 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-YAK Vifa2g01094 Pkinase 1.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01094 K18670 - gmx:100792777 525.013