Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01093 ATGAATCCACAGTTTAAATATTCCAAAGATCTAAATCCAAAGAGATTTTTGACCAGTCCATCTACTGGAGTGCTTAATGATGGCTATGATAATCTAAACTCAGATCTTATTCTGACAGTGAATTTGGTCTTGATCCATGTAGAGAAAAGTAGAAGATATACTGTCAAAGATCTCCTTGGCCACGGGACATTTGGACAAGTGGCCAAATGCTGGGATTCTGATACCAACAGTTTTGTTGCTGTGAAGATCATTAAAAATCAACCTGCGTATTATCAACAGGCGCTGGTTGAAGTAACTATTTTAACAACGTTAAATAAGAAGTACGATCCTGAGGATAAGCATCACATTGTTCGTATATTTGATTATTTTGTATATCAACGGCATTTGTGCATATGCTTTGAATTGCTGGACACAAACCTGTATGAGCTTATCAAAATGAATCATTTTAGGGGATTGTCACTTGGTATTGTTCAGCTGTTCTCTAAGCAGATTTTATGTGGACTGGCTCTATTAAAAGATGCTGGCATTATTCATTGTGATCTGAAGCCAGAAAACATCCTTTTATGTGCGAGTGCGAATCAAACAGAAATAAAGATTATTGACTTTGGATCAGCATGCATGGAAAACCGCACTGTGTATTCCTATATTCAGAGTCGATACTATAGGTCTCCTGAGGTTCTTCTTGGATATCAATACACAACAGCTATTGATATGTGGTCCTTTGGGTGCATAGTGGCGGAATTATTTCTTGGATTACCATTATTCCCCGGGGCTTCAGAATTTGATCTTTTGAAAAGGATGATTGAAATAATTGGGTCACCTATAGAATCTAGGATAGACTTTGATTGTCCTCATCTTATGGGCCAGATACAATGTATCAATGAAGATGTTGAAAAGGACGATATAAATGATGAAATTCAAGAGGACGACATAAATGATAAAATTCAAGAGGACGACCTAAATGATAAAATTCAAGAGGACGACGTAGATGACGAATTTCAAGAGGACGACATAGATCTAGATGATGAATTTCAAGAGGAGGATATAGATGGTGAATTTCAAGAGGACGACGTAGATGAAGAATTTTTGGAGGATGACATATCTAACGAATTTCAAGAGGACGATCTGGATGCTTTACTCCTAGAAGACAAACTTGAATGA 1161 0.3695 MNPQFKYSKDLNPKRFLTSPSTGVLNDGYDNLNSDLILTVNLVLIHVEKSRRYTVKDLLGHGTFGQVAKCWDSDTNSFVAVKIIKNQPAYYQQALVEVTILTTLNKKYDPEDKHHIVRIFDYFVYQRHLCICFELLDTNLYELIKMNHFRGLSLGIVQLFSKQILCGLALLKDAGIIHCDLKPENILLCASANQTEIKIIDFGSACMENRTVYSYIQSRYYRSPEVLLGYQYTTAIDMWSFGCIVAELFLGLPLFPGASEFDLLKRMIEIIGSPIESRIDFDCPHLMGQIQCINEDVEKDDINDEIQEDDINDKIQEDDLNDKIQEDDVDDEFQEDDIDLDDEFQEEDIDGEFQEDDVDEEFLEDDISNEFQEDDLDALLLEDKLE 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01093 386 ProSitePatterns Protein kinases ATP-binding region signature. 59 82 IPR017441 GO:0005524
Vifa2g01093 386 FunFam Dual specificity tyrosine-phosphorylation-regulated kinase 1A 16 132 - -
Vifa2g01093 386 Pfam Protein kinase domain 53 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01093 386 PANTHER DUAL SPECIFICITY PROTEIN KINASE 25 276 - -
Vifa2g01093 386 Gene3D Phosphorylase Kinase; domain 1 17 133 - -
Vifa2g01093 386 MobiDBLite consensus disorder prediction 309 331 - -
Vifa2g01093 386 Gene3D Transferase(Phosphotransferase) domain 1 134 348 - -
Vifa2g01093 386 SUPERFAMILY Protein kinase-like (PK-like) 47 279 IPR011009 -
Vifa2g01093 386 SMART serkin_6 53 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01093 386 ProSiteProfiles Protein kinase domain profile. 53 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01093 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 176 188 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01093 Vifa-Chr2 296735909 296741313 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01093 59 370 MAP Kinase Gene Family AT3G45640 32.530 1.99e-34 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-YAK Vifa2g01093 Pkinase 1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01093 K18670 - gmx:100792777 520.005