Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01076 ATGTCTCAAACCACCACCCTCGTTACACTCCTCTTCTTCCTCCTCCTCATCCTCTTCCCAACCACACTCTCCCAAAACACAACCTTCAACTTCTCCTCTTTCACCCTCCGCAACATAACCCTCCTCGGCGACTCCTTCCTCCGCAACGGCGTTGTTGGCCTCACCCGCTCCACCACCGTCCCTGCTTCCTCCTCCGGCACCCTCCTTTACAACAACCCCATTTCTCATATACCCGAGTCCTCTTTCTCTTTCTCCACCAACTTCACTTTCTCCATCACCAATTCAAATCCAAACCCTCCCTCTTCCTCACCCAACCACTTGTCCTTCTTCCTCAACTCCACCACCCCTTTCATCTCCCTCGATTTTCACACTAACAACAACCAAGTCAGTTTATACTTGAACACTTCAGTCCAAAAAACCATTGATTTCAATCTCACAAATGCAAACTTGATCACTTCTTGGATTGACTATAACAGTTTCAACACAAACTTTAGTCTTTTCTTAAGCTATGCAAATTCGAGTTTTTCGAAACCCGAAAAACCTATTTTGAATGTTGATTTTGATCTTTCTGAGTATTTCAGTGATGTTGAGTTTATCTATGTTGGGTTCTTGGGTTCTGCTTTAGGAAGTACCGAGCTTCAACAAATCATGAATTGGAGCTTTGAATCTAGTCAGTTTCCAACTTTGAATCAAACTCAGAATAAAAATTCAAGCTTTCACCATGTGGGATATGAAAATGAGGATGTTCCTGCTTCAAATTCAACAAAAAAAGGTCATGGAAAGAGATTTGTGATTGGTTTATGTGTTGCTATTGTGGGTCCATCTTGTTTCTTTGTGTTGTTTTTTGTTTTAGGGTATGTTTCTTATAGGAAATGGAGTAGCTTAAGGAAGGTTAAGAAGAGTAAAAACTCTATAGGGTGTCCTACAGAGTTTGGTTACAAGGAGTTAAAGTTTGCTACAAAAGGGTTTCATGGTTCAAGGATAATTGGGAATGGTTCATTTGGGACAGTTTATAAGGCTTTGTTTGTTTCTTCAGGAACAGTTGCTGCTGTTAAAAGATCAAGACATTCACATGAAGGGAAAACCGAGTTTTTATCCGAGTTATCGATTATAGCTGGTTTGAGGCACAAGAATTTGGTTCAACTTTTAGGTTGGTGTGTTGAGAAAAACGAATTGTTGCTTGTTTATGAGTTTATGGAGAATGGAAGTTTAGATAAGTTGCTTTATAGAGAAGCTATTGAGTGTGGTGTTTTGTTGAGTTGGGTTCAAAGGTTTAACATTGTTGTTGGTTTGGCTTCTGTTTTAGCTTATTTACATCAAGAATGTGAGCAAAGAGTGATTCATAGAGATATTAAGACGGCGAATATATTGTTAGATGGAAATTTGAATCCTAGGTTAGGTGATTTCGGATTGGCGAAGCTTATGGATCATGATATGAGTCCGGTTTCAACGTTAACCGCCGGAACAATGGGATACCTAGCTCCGGAGTATCTTCAATACGGTAAAGCAACCGATAAGACCGATGTTTTTAGCTTCGGGGTCGTTGTTCTTGAGGTTGCTTGCGGTAGAAGGCCGATTGACAAAGAGGGTCAAGAGATTGTGAACTTGGTTGATTTTGTTTGGGGACTTTACGCGAAAGGGAAGATTATCGAAGCGGTTGATAAAAGATTGAACAGCGAGTTCGATGAGGTTGAAATGAGGAAGATGTTGTTGTTAGGTTTGAGTTGTGCTAATCCTAATAGTGATGAAAGGCCTTCTATGAGAAGAGTTTTGCAGATTCTTAACAATGAAGGTGTGCCTCTTGTTGTGCCTAAAGTGAAACCTTGTCTTAGTTTCTCTTCTGGATTGTTGTTGACTCTTGATGAGATTGTTTCGGATTTTGATGAAAGGTTTTGTTCTAATCAATATAGTTGCAAGGTTCAAATTGAACCAAGTAGTTGA 1941 0.4003 MSQTTTLVTLLFFLLLILFPTTLSQNTTFNFSSFTLRNITLLGDSFLRNGVVGLTRSTTVPASSSGTLLYNNPISHIPESSFSFSTNFTFSITNSNPNPPSSSPNHLSFFLNSTTPFISLDFHTNNNQVSLYLNTSVQKTIDFNLTNANLITSWIDYNSFNTNFSLFLSYANSSFSKPEKPILNVDFDLSEYFSDVEFIYVGFLGSALGSTELQQIMNWSFESSQFPTLNQTQNKNSSFHHVGYENEDVPASNSTKKGHGKRFVIGLCVAIVGPSCFFVLFFVLGYVSYRKWSSLRKVKKSKNSIGCPTEFGYKELKFATKGFHGSRIIGNGSFGTVYKALFVSSGTVAAVKRSRHSHEGKTEFLSELSIIAGLRHKNLVQLLGWCVEKNELLLVYEFMENGSLDKLLYREAIECGVLLSWVQRFNIVVGLASVLAYLHQECEQRVIHRDIKTANILLDGNLNPRLGDFGLAKLMDHDMSPVSTLTAGTMGYLAPEYLQYGKATDKTDVFSFGVVVLEVACGRRPIDKEGQEIVNLVDFVWGLYAKGKIIEAVDKRLNSEFDEVEMRKMLLLGLSCANPNSDERPSMRRVLQILNNEGVPLVVPKVKPCLSFSSGLLLTLDEIVSDFDERFCSNQYSCKVQIEPSS 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01076 646 FunFam L-type lectin-domain containing receptor kinase VIII.1 399 612 - -
Vifa2g01076 646 SUPERFAMILY Concanavalin A-like lectins/glucanases 27 228 IPR013320 -
Vifa2g01076 646 Gene3D - 24 225 - -
Vifa2g01076 646 Pfam Legume lectin domain 127 234 IPR001220 GO:0030246
Vifa2g01076 646 Pfam Legume lectin domain 27 115 IPR001220 GO:0030246
Vifa2g01076 646 Gene3D Transferase(Phosphotransferase) domain 1 399 599 - -
Vifa2g01076 646 ProSitePatterns Protein kinases ATP-binding region signature. 329 352 IPR017441 GO:0005524
Vifa2g01076 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672|GO:0006468
Vifa2g01076 646 SUPERFAMILY Protein kinase-like (PK-like) 307 619 IPR011009 -
Vifa2g01076 646 SMART serkin_6 323 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01076 646 CDD STKc_IRAK 329 596 - -
Vifa2g01076 646 ProSiteProfiles Protein kinase domain profile. 323 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01076 646 PANTHER - 38 597 - -
Vifa2g01076 646 Pfam Protein kinase domain 324 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01076 646 Gene3D Phosphorylase Kinase; domain 1 287 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01076 Vifa-Chr2 289725981 289727921 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01076 24 629 Receptor kinase-like Gene Family AT5G55830 53.988 0.0 643
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vifa2g01076 Pkinase 7.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01076 - - gmx:100808744 710.294