Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01074 ATGGAGCATGAATATCCTTTTATTCACAATGATCAAAATCCAATATCAAGTTCTGGTTCATCTATGTTGCAACAAACTAGCGCCTCTACAGATGCTGCAGAAACAGCTACAAGAATGAACCCTAGAAAGCATGACATTGTGCCACAATTGACAATGGCAGAGAAAACTTCCTTGCCGTTAAAAAATGTGACAAAAATCATGAGAAAAGGTTTGCCACCATACATAAAAATCTCTGATGGAGCAAAGGAGATGGCTGAACAAAGTGCGTCAAAGTTCATTAGCATGGTAACAAAAAAAGCCACTGAGCGTTGCCTAAGGGAGTCAAGAAAAACTTTAGGTGCTGAAGATCTACTATGGGCCATGATGGCTTTAGGTTACCATAACTATTTTAGGGTTCTGAGCTTTTATCTCGAACGCTATCGTTATAGTAATGGGACTAGGCCCATGCAACTTGCTTATGAGATTCCAAACTCCATCTTACCATCTTGTGAGATTTCTCAACAAGGTTTACCACCACCACCTCCACCTGTGATGAACCAAAACAGTTCTATTGAAATAGCCGAAGAAGTGAACATTGATGAGTTTTGGGATCAACTGAGTGATTTGGGTGATGGTTCCTTAGGTGCTGGTTCAGCAAACTCTGGTGGCATGTTTGATGAAGGCATCGATAAAATGAATGACTAG 684 0.405 MEHEYPFIHNDQNPISSSGSSMLQQTSASTDAAETATRMNPRKHDIVPQLTMAEKTSLPLKNVTKIMRKGLPPYIKISDGAKEMAEQSASKFISMVTKKATERCLRESRKTLGAEDLLWAMMALGYHNYFRVLSFYLERYRYSNGTRPMQLAYEIPNSILPSCEISQQGLPPPPPPVMNQNSSIEIAEEVNIDEFWDQLSDLGDGSLGAGSANSGGMFDEGIDKMND 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01074 227 PRINTS CCAAT-binding transcription factor subunit A signature 85 103 - -
Vifa2g01074 227 PRINTS CCAAT-binding transcription factor subunit A signature 123 141 - -
Vifa2g01074 227 PRINTS CCAAT-binding transcription factor subunit A signature 104 122 - -
Vifa2g01074 227 MobiDBLite consensus disorder prediction 1 38 - -
Vifa2g01074 227 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 31 148 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vifa2g01074 227 Gene3D Histone, subunit A 50 152 IPR009072 GO:0046982
Vifa2g01074 227 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 56 121 IPR003958 -
Vifa2g01074 227 MobiDBLite consensus disorder prediction 10 36 - -
Vifa2g01074 227 SUPERFAMILY Histone-fold 56 145 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01074 Vifa-Chr2 289504398 289505511 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01074 48 175 CCAAT-HAP3 Transcription Factor Family AT1G21970 42.647 7.23e-28 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vifa2g01074 CBFD_NFYB_HMF 2.1e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01074 K08065 - psat:127084724 269.626