Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01054 ATGGCGGTTTCTTCTCTCTCTACAACCTTTGTTCCTTCTCTTTCTCTCTCCTCCAAACCAAACGTCCAATCTCCATGCTTTCTCTCCGGTAACACTTTCAGGCTTCCGAACCCCAAACCTCTTCATTCATCAACCGTGGTTTATGCTGCTCCGGAAGTGTTGAATTCCGCTGAAACCAAAGATGTTGAGTCTGGCTCTCAGGTTGATGACTTGGAAACTCCAAGCACTTCGAAAATTAGCATTGGAGCTGATGCAGACATGATGGCACCAAAGCTAAGAATCAGAATCAAGCTTAGATCTTACTTTGTGCCCTTGATAGAGGATTCTTGCAAGCAGATATTGGATGCAGCAAGAACTACCAATGCAAAAACAATGGGTCCTGTTCCTTTACCAACCAAGAAGCTAGTTTTTTGTACTCTTAGGTCTCCACACGTACACAAAGATGCTCGGTTCCATTTCGAGATCAGAACTCATCAGCGTCTCATTGATATTCTCTTTCCTACTGCTCAGACAATAGATTCTCTTATGCAACTGGATCTTCCTGCTGGTGTTGATGTCGAGGTCAAGCTTTAG 573 0.4398 MAVSSLSTTFVPSLSLSSKPNVQSPCFLSGNTFRLPNPKPLHSSTVVYAAPEVLNSAETKDVESGSQVDDLETPSTSKISIGADADMMAPKLRIRIKLRSYFVPLIEDSCKQILDAARTTNAKTMGPVPLPTKKLVFCTLRSPHVHKDARFHFEIRTHQRLIDILFPTAQTIDSLMQLDLPAGVDVEVKL 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01054 190 ProSitePatterns Ribosomal protein S10 signature. 117 132 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vifa2g01054 190 SMART Ribosomal_S10_2 95 189 IPR027486 -
Vifa2g01054 190 FunFam 30S ribosomal protein S10 91 190 - -
Vifa2g01054 190 PRINTS Ribosomal protein S10 family signature 149 163 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vifa2g01054 190 PRINTS Ribosomal protein S10 family signature 93 106 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vifa2g01054 190 PRINTS Ribosomal protein S10 family signature 128 143 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vifa2g01054 190 Hamap 30S ribosomal protein S10 [rpsJ]. 91 190 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vifa2g01054 190 Gene3D Ribosomal protein S10 domain 83 190 IPR036838 -
Vifa2g01054 190 NCBIfam 30S ribosomal protein S10 93 189 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vifa2g01054 190 Pfam Ribosomal protein S10p/S20e 95 189 IPR027486 -
Vifa2g01054 190 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 55 190 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vifa2g01054 190 SUPERFAMILY Ribosomal protein S10 93 190 IPR036838 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01054 93 190 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 32.323 2.03e-10 54.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01054 2 285000465 285002820 Vifa2g01054 2 285000465 285002820 ECH