Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01052 ATGGGTCTACTAGTCCTCTACTCTGCATATCTTTTCTCCTTTGTTCTCTTAATCTTTATAGTACAAAAGATAAGAAAGAAGAAAAACTACTCGACTTATAACTTAGCACGAGGACCTAGAAAGCTACCGATTATAGGAAATATACACAATCTGTTAAGCTCTCAACCTCATCGAAAATTAAGAGATTTGGCCAAAAAATATGGACCTGTGATGCATCTTCAACTTGGAGAGGTTTCTACTATTGTTATTTCATCGCCTGAATGTGCTAAAGATGTAATGAAAACCCATGATATTAACTTTGCATCAAGGCCTCATCTCCTAGCTTCAGAAATAATGTCTTACAATTCCACGAATATAGCTTTTGCTCCTTATGGTAGTTATTGGAGACAGTTACGAAAATTATGCACGTCGGAGCTTTTAAGCCCGAAACAGGTAAACTCGTTGCAACCGATTAGAGAAGAGGTGCTTTCCAATCTTGTCAAATGGATTGCTTCGCAGAATGGATCGTCGATCAACCTCACTGAAGCTGTAATTTCTTCAATATATACTCTTGTTTCGAGGTCTGCGTTTGGCGATAAATGCAAAGACCAGGAAAAATTTATATCAGTGGTGAAAGAATCAATAAAGGTTTCGGCGGGTTTTGACTTGGGAGATTTGTTTCCTTCTGCTAAATGGATACAACGTGTTACTGGTTTGAGGCCTAAGCTTGAGAGGTTTCAGCGACAAACTGATCAGATATTTGAAAACATTATCAATGACCATAAAGGGGAAAGTTACGCAAAAGCCAAAGATGATCAAGGTGATGCGGAAGAGGAAGATCTGGTAGACGTTCTCTTAAAATATGAGGATGGTAGCAACAAGGATTTTTCCTTAACAAAAGACAATATCAAAGCCATAATCTTGGACGTTTTTGGGGCTGGAAGTGAGACATCGACAAGCACGATAGATTGGGCAATGGTAGAAATGGTAAGGGAGCCAAGAATAATGAAGAAAGCACAAGAGGAGGTAAGAGAGGTTTTCAAAATGAAAGGAAAGGTTGACGAAAATGGCATCAATGAACTCAATTATTTGAAATCAATTGTCAAAGAAACACTAAGGCTACACCCTCCAGCACCTCTTCTGCTACCAAGAGAATGTGGTAAAGCATGTGAGATAAACGGCTTTCACATACCGACTAAGACTAAGGTGATAGTCAATGCTTGGGCAATTGCAAGAGATCCAAACTACTGGACTGAGCCAGAGAGGTTTTATCCGGAGAGATTCATTGACAGCACCATAGACTATAAAGGGAGTAATTTTGAGTACATTCCTTTTGGTGCTGGAAGAAGAATATGCCCAGGGATCACATTTGGTTTGAGAAATGTTGAGGTAGCCCTTGCAATGTTGTTGTATCATTTTGACTGGAAGCTACCCAGTGGAACCAAATGTGAAGAATTGGACATGACTGAGCAATTTGGAGTCACTGTGAGAAGAAAAGATGATCTTTTATTGTTACCTTTTGTTTATCATCCTTTGAATGTCACATGA 1527 0.391 MGLLVLYSAYLFSFVLLIFIVQKIRKKKNYSTYNLARGPRKLPIIGNIHNLLSSQPHRKLRDLAKKYGPVMHLQLGEVSTIVISSPECAKDVMKTHDINFASRPHLLASEIMSYNSTNIAFAPYGSYWRQLRKLCTSELLSPKQVNSLQPIREEVLSNLVKWIASQNGSSINLTEAVISSIYTLVSRSAFGDKCKDQEKFISVVKESIKVSAGFDLGDLFPSAKWIQRVTGLRPKLERFQRQTDQIFENIINDHKGESYAKAKDDQGDAEEEDLVDVLLKYEDGSNKDFSLTKDNIKAIILDVFGAGSETSTSTIDWAMVEMVREPRIMKKAQEEVREVFKMKGKVDENGINELNYLKSIVKETLRLHPPAPLLLPRECGKACEINGFHIPTKTKVIVNAWAIARDPNYWTEPERFYPERFIDSTIDYKGSNFEYIPFGAGRRICPGITFGLRNVEVALAMLLYHFDWKLPSGTKCEELDMTEQFGVTVRRKDDLLLLPFVYHPLNVT 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01052 508 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 438 447 IPR017972 GO:0005506|GO:0016705
Vifa2g01052 508 SUPERFAMILY Cytochrome P450 38 497 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g01052 508 PRINTS E-class P450 group I signature 358 376 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g01052 508 PRINTS E-class P450 group I signature 435 445 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g01052 508 PRINTS E-class P450 group I signature 445 468 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g01052 508 PRINTS E-class P450 group I signature 295 312 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g01052 508 PRINTS E-class P450 group I signature 315 341 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g01052 508 PRINTS E-class P450 group I signature 88 109 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g01052 508 PRINTS E-class P450 group I signature 64 83 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g01052 508 PRINTS E-class P450 group I signature 399 423 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g01052 508 FunFam Cytochrome P450 71D8 28 499 - -
Vifa2g01052 508 Pfam Cytochrome P450 37 488 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g01052 508 PRINTS P450 superfamily signature 359 370 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g01052 508 PRINTS P450 superfamily signature 436 445 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g01052 508 PRINTS P450 superfamily signature 306 323 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g01052 508 PANTHER OS08G0105600 PROTEIN 59 504 - -
Vifa2g01052 508 Gene3D Cytochrome P450 28 495 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g01052 508 CDD CYP71-like 66 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01052 Vifa-Chr2 284011899 284013523 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01052 10 499 Cytochrome P450 AT3G26310 42.545 1.67e-142 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01052 - - tpra:123912942 830.091