Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01045 ATGACTCCACTTATAACATTAGGGAGTAAAAAGACTTTAAACCATCAAGACCTTCCTCTTCTTTCTGCCAATGACACTGCCTATGGATCTTTTTCTACTTTTAGAAAAAGGCTTCAGTTGGAGTGTGGTAATGTTAGGACTGTGACAACTATTAAGCTCGTCAAGCTGCTCTTCTTATCAACATGGAAACAGATTCTTATATCTGGCTTATTTGCATTCTTGTACGTATGTGCTACTTATGTAGGACCCTACCTTATTGAAAATCTTGTTCAATATCTCAATGATGAAAACAAGGTTAAGAATGAAGGCTATGTTTTGGCTACGGCATTTGTTGTGGCAAAGCTTGTTGAGTGTCTTTCGCAAAGGCACTGGATGTTTAAGTTTCAACAGGTTGGTGTTAGGATGCAAGCAATGTTGGTGTCAATGATCTATGCTAAAGGTTTGACACTGTCGGGTCAATCAAAAGAGGGACATAGCAGTGGCGGAATCATCAACTTAATGACTGTTGATGCTCAAAGGATAGGTGACTTTTGTTGGTATATGCACGATATATGGATGGCTGTTCTACAAATTTCTCTGGCTTTGTTTATTCTTCATAGAAGTGTCGGGGTTGCTTCAGTGGCCGCTTTTGCTGCAACTGTTATTGTGATGTTGCTAAACCTCCCTGCGACTTCACTGCAAGAGAAGTTCCAAGCTAAGTTAATGGAGTTCAAGGATAAAAGAATGAAGGCAACGTCTGAGGTTCTAATGAACATGAGGATTCTCAAACTGCAAGCATGGGAGATGAAGTTCTTATCAAAGATTATTCAGCTCAGGAAGTTAGAGGAGACATGGCTAAAAAAATTTCTTATTGGTAATGCAATTGTTAGATTTCTCTTCTTTAACGCACCGACGTTTGTTGCTGTGGTCACTTTCGGTGCTTGTGTTCTTCTAGGGGTTCCACTTGAATCAGGAAAGATCTTATCCGCTCTTGCAACATTTCGAATTCTCCAAATGCCTATCTATGGTCTTCCTGACACAATTTCAATGATTGCACAAACCAAAGTTTCCCTCGATAGGATCGTCACTTTTCTTCGTCTAGATGATTTGCAGGCTGATGTAGTGGAGAAGCTTCCGCGAGGTAGTTCTGATATAGCAATTGGAATAGTTGATGGAAATTTCTCTTGGGATCTTTCCTCTGTCAATACAACTTTGAAAAACATAAACCTCAGAGTTAGTCATGGTATGAGGGTTGCTGTATGTGGTACTGTTGGATCAGGCAAGTCGAGTTTACTTTCTTGTATAATAGGTGAAATACCAAAGATATCTGGTAACTTGAAGGTGTGTGGAACTAAGGCTTATGTTGCTCAATCACCATGGATTCAGAGTGGAAAGATAGAAGAGAACATACTGTTTGGAAGAGGGATGGATAGGGAAAAGTATGAGAAGGTGCTAGAAGCATGTTCGTTGAAGAAAGACCTAGAGGTTTTACCATTTGGTGATCAGACCATTATTGGAGAGAAGGGAATTAATTTGAGTGGTGGACAGAAGCAAAGAGTACAAATAGCGCGTGCACTTTACCAAGATGCCGATATATATCTTCTCGATGATCCCTTTAGTGCCGTTGATGCTCATACAGGATCCCATATCTTTAAGGAGTGTTTGCTTGGCCTTTTGAAAACAAAAACTGTGATCTACATAACACATCAAGTAGAGTTCTTACCTGACGCTGATTTGATACTCGTCATGAAAGAAGGAAGGATAACTCAATCAGGAAAATACAACGACATTCTTACGTCAGGAACTGATTTTATGGAACTTGTAGGCGCACATAGAGCAGCGTTGTCTTCAGTTAAATCCTTAGAGAGAAGGCCTACGTTCAAAACATCCGGAGAAGACACAAGTTCATTAAGTGATTTTGAACTTGAGCAAGAAATCGAAAATGTAGATGATCGAAACAGCAAGTTAGATGAGACAATTGTGTCGAAAGGCCAACTTGTTCAAGAGGAAGAACGTGAAAAAGGTAGTGTTGGGTTTAAAGTGTTTTGGAAATACATAACAACAGCTTATGGAGGAGCTCTTGTACCTTTCCTATTGCTTTCACAGATACTCACTGTGGTTTTACAAATCGCAAGCAATTATTGGATGGCTTTGGCAACTCCTGTTTCCGCAACTGAAGAACCTGATATTGGAAACTTTACTCTGATGGTTGTCTATGTTTCTTTGGCTATTGGAAGTTCCATTGGCACCCTTGGCAGAGCCGTTCTTGCTGCGATAGCTGGATACAAGACCGCCACCATGCTCTTCAATCAAATGCATTTGAGCTTCATTCGAGCGCCAATGTCATTTTTTGATTCCACCCCAAGTGGAAGAATTCTTAATAGAGCCTCGTCAGACCAAAGTGCAGTAGATATGAACATCTCAAATCTAGCATGGGGTGTCACCTACAATATGGTTCAGCTATTGGGAAGTATTGCTGTGATGTCTCAAGCAGCATGGCAGGTGTTCATAGTATTGATTCCTGTCATGGCAGCTTGCATTTGGTACCAGCGATACTACTCAGCATCAGCACGAGAATTGGCACGATTAACTGGTGTATGCCAAGCGCCGGTTATACAACATTTTTCTGAAACGATATCCGGATCAACAACCATAAGAAGTTTTGAGCAAGAATCAAGATTTACTGAATTGAATATGCAATTGATCGACAAATATTCCCAACCTAAATTATACATTGTTAGTGCAATGCAATGGTTGAATTTCAGATTGGATCTTTTATCCTCTACCATATTTGCCTTCTGCTTGGTTTTCTTGGTATCTTTTCCAAGTTCAATTGCTGATCCTAGTATTGCGGGATTGGCTGTGACATATGGAATTAATCTAAATGCTATACAATCTAATTTAATTAGGTTTCTTTGCAATTTGGAGAACAAAGTTATATCTGTAGAAAGAATACTTCAGTACACCTCCATCCCAAGTGAAGCACCTCTTGTAATAAAAGACAATCAACCAGATCATTCTTGGCCATCATTCGGAGAGGTTCATATCCAGAATTTGCAGGTTCAATATGCTCCTCACTTGCCTCTTGTTTTACGTGGACTAAAATGCACTTTCACCGCTGGAGCAAAAACTGGCATTGTCGGAAGAACTGGAAGTGGGAAGTCAACACTTGTGCAAGCACTTTTCAGACTTGTTGAGCCTGTCGCAGGACAAATATTGATAGATAACATCAACATCTCATTGATTGGAATCCATGATTTACGGTCCAGACTCAGCATAATTCCTCAGGATCCAACAATGTTTGAAGGGACTGTAAGAAGCAACCTCGACCCCCTGGAAGAATACACAGATGAACAAATTTGGGAGGCTTTAGATATGTGCCAACTAGGAGATGAAGTGAGGAAGAAAGAAGGAAAGCTCGACTCAACAGTTACTGAGAATGGAGAAAACTGGAGCATGGGTCAAAGACAGTTGGTTTGCCTCGGCCGTGTTTTACTTAAGAAAAGCAAGATATTAGTGCTTGATGAAGCAACTGCATCAGTTGATACAGCAACAGATAATATTATTCAGCAGACGGTTAAGCAATATTTCTCTGATTGCACGGTCATTACCATTGCTCATAGAATAACTTCAATCCTTGATAGCGATATGGTTCTGTTTCTCAGTGAAGGTCTTATTGAGGAATATGATTCACCAAAGAAGTTGCTTAAGGATAAATCTTCGTCTCTTGCTCAACTAGTTGCAGAATACACAAGGAGATCAAACACTGGTTTTGGAAGTTGA 3762 0.4011 MTPLITLGSKKTLNHQDLPLLSANDTAYGSFSTFRKRLQLECGNVRTVTTIKLVKLLFLSTWKQILISGLFAFLYVCATYVGPYLIENLVQYLNDENKVKNEGYVLATAFVVAKLVECLSQRHWMFKFQQVGVRMQAMLVSMIYAKGLTLSGQSKEGHSSGGIINLMTVDAQRIGDFCWYMHDIWMAVLQISLALFILHRSVGVASVAAFAATVIVMLLNLPATSLQEKFQAKLMEFKDKRMKATSEVLMNMRILKLQAWEMKFLSKIIQLRKLEETWLKKFLIGNAIVRFLFFNAPTFVAVVTFGACVLLGVPLESGKILSALATFRILQMPIYGLPDTISMIAQTKVSLDRIVTFLRLDDLQADVVEKLPRGSSDIAIGIVDGNFSWDLSSVNTTLKNINLRVSHGMRVAVCGTVGSGKSSLLSCIIGEIPKISGNLKVCGTKAYVAQSPWIQSGKIEENILFGRGMDREKYEKVLEACSLKKDLEVLPFGDQTIIGEKGINLSGGQKQRVQIARALYQDADIYLLDDPFSAVDAHTGSHIFKECLLGLLKTKTVIYITHQVEFLPDADLILVMKEGRITQSGKYNDILTSGTDFMELVGAHRAALSSVKSLERRPTFKTSGEDTSSLSDFELEQEIENVDDRNSKLDETIVSKGQLVQEEEREKGSVGFKVFWKYITTAYGGALVPFLLLSQILTVVLQIASNYWMALATPVSATEEPDIGNFTLMVVYVSLAIGSSIGTLGRAVLAAIAGYKTATMLFNQMHLSFIRAPMSFFDSTPSGRILNRASSDQSAVDMNISNLAWGVTYNMVQLLGSIAVMSQAAWQVFIVLIPVMAACIWYQRYYSASARELARLTGVCQAPVIQHFSETISGSTTIRSFEQESRFTELNMQLIDKYSQPKLYIVSAMQWLNFRLDLLSSTIFAFCLVFLVSFPSSIADPSIAGLAVTYGINLNAIQSNLIRFLCNLENKVISVERILQYTSIPSEAPLVIKDNQPDHSWPSFGEVHIQNLQVQYAPHLPLVLRGLKCTFTAGAKTGIVGRTGSGKSTLVQALFRLVEPVAGQILIDNINISLIGIHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALDMCQLGDEVRKKEGKLDSTVTENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNIIQQTVKQYFSDCTVITIAHRITSILDSDMVLFLSEGLIEEYDSPKKLLKDKSSSLAQLVAEYTRRSNTGFGS 1253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01045 1253 SMART AAA_5 407 580 IPR003593 GO:0016887
Vifa2g01045 1253 SMART AAA_5 1033 1225 IPR003593 GO:0016887
Vifa2g01045 1253 CDD ABC_6TM_ABCC_D2 688 982 IPR044726 GO:0140359
Vifa2g01045 1253 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 690 970 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa2g01045 1253 FunFam ABC transporter C family member 10 49 362 - -
Vifa2g01045 1253 Gene3D ABC transporter type 1, transmembrane domain 652 988 IPR036640 GO:0005524|GO:0016020
Vifa2g01045 1253 Gene3D ABC transporter type 1, transmembrane domain 44 362 IPR036640 GO:0005524|GO:0016020
Vifa2g01045 1253 FunFam ABC transporter C family member 3 990 1242 - -
Vifa2g01045 1253 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 998 1232 IPR027417 -
Vifa2g01045 1253 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 66 346 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa2g01045 1253 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1007 1241 IPR003439 GO:0005524
Vifa2g01045 1253 Pfam ABC transporter 1025 1172 IPR003439 GO:0005524
Vifa2g01045 1253 CDD ABC_6TM_ABCC_D1 67 354 IPR044746 GO:0140359
Vifa2g01045 1253 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 380 603 IPR003439 GO:0005524
Vifa2g01045 1253 SUPERFAMILY ABC transporter transmembrane region 688 989 IPR036640 GO:0005524|GO:0016020
Vifa2g01045 1253 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 384 602 IPR027417 -
Vifa2g01045 1253 SUPERFAMILY ABC transporter transmembrane region 59 359 IPR036640 GO:0005524|GO:0016020
Vifa2g01045 1253 FunFam ABC transporter C family member 5 652 988 - -
Vifa2g01045 1253 Gene3D - 990 1243 IPR027417 -
Vifa2g01045 1253 Pfam ABC transporter transmembrane region 66 333 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa2g01045 1253 Pfam ABC transporter transmembrane region 691 933 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa2g01045 1253 Pfam ABC transporter 398 532 IPR003439 GO:0005524
Vifa2g01045 1253 Gene3D - 363 620 IPR027417 -
Vifa2g01045 1253 FunFam ABC transporter C family member 5 365 612 - -
Vifa2g01045 1253 CDD ABCC_MRP_domain1 380 580 - -
Vifa2g01045 1253 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 1241 - -
Vifa2g01045 1253 ProSitePatterns ABC transporters family signature. 505 519 IPR017871 GO:0005524|GO:0016887
Vifa2g01045 1253 CDD ABCC_MRP_domain2 1005 1225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01045 Vifa-Chr2 282468246 282473416 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01045 386 619 Calmodulin-binding Proteins AT2G36910 29.921 1.24e-25 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01045 - K05666 gmx:106794105 2001.1