Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01043 ATGGGATTTAACCTTCATGTTCTCATATCAACTATCCTTGGTTTCCTTTTGTTCATGTTAATCAAAATTATTTTGAGATCAAAAGCTAAGAAAACAAACTACAAATTACCACCAGGACCAAGAAAACTTCCACTCATAGGGAACACTCACCAGCTTGGAGCCTTACCTCATCAATCCCTAGCAAAACTAGCGCACCAATATGGACCACTCATGCATATGCAACTTGGTGAACTTTCTTGCATAGTGATTTCATCTCAAGAAATGGCTAAAGAGGTAATGAAAAAACATGATCTCAACTTTGCAAATAGGCCTCCACTTCTTGCAGCAGAAATAATAACTTATGGATATAAAGGAATGACTTTTTCTCCACATGGATCCTATTGGAGACAGATGAGGAAGATTTGTACCATGGAACTACTATCACCAAAACGAGTCGAATCTTTTAGATTGGAAAGGGAAGAGGAATTAGCAAGTTTTGTTAAAGATATAATTTTGAGTGAAGGGTCATCTATAAATCTTAGTGAGAAGATAGATTCATTAGCTTATGGATTAACTTCAAGAACAGCTTTTGGTGCAGAAATTGAAGGTAAAGAAAAGTATAGGAAACTTATGAAGGATGTGTCAAAGATGGCTGGAGGGTTTTCTGTTGCTGATTTGTTTCCTTCAATTGGAATCCTTCAAGTTCTTACAGGATTAAGGAAAAAAATTGACAAGCTTCATAGTGAAATGGATGTGATACTAGAGAATGTTGTAAGAAGTCATAGAGAAAAGAATTTGGAAACAAGGGATGAGGAAGAAACTGGGGAGGATCTTGTTGATGTTCTTTTGAAGCTGCAAAAGCATAGTCATCTGGAACATCCCTTGACAGACACTGTTATCAAAGCAACAATTTTGGATATCTTCAGTGCTGGAAGTGACACGACATTTACAACTCTAGAATGGGCAATGTCAGAACTAGTTAAAAATCCAAATGTAATGAAGAAAGCCCAGACTGAAATAAGAAAAGTGTACAATAAAAAAGGATGTGTAGATGAAGTAAGTCTTGATAAGCTTGAATACTTGAAATCAATTATCAAAGAAACATTGCGTCTACATGCACCAGTTTCATTATTACTTCCAAGACAGTGTCGTGAAAAATGTGAAATAAATGGATACGAAATACCTGCAAAAAGCAAGGTAATTGTTAATGCTTGGTCAATAAGCAGAGATTCAAAATACTGGAATGAACCTATGAAGTTTATTCCAGAAAGGTTTATTGATAGTGAAGTTGATTGCAAAGGTGTGGATTTTCAATTTATACCATTTGGTGCTGGAAGAAGGATGTGTCCTGGTATAACATTTGGTATTGCTAACTTGGAAATTTCTCTTGCGAATTTGCTTTACCATTTTGATTGGAACATTCCTAATGGGGATAATGCTGATGAACTTGACATGAATGAATCTTTTGGATTGAATGTTAGAAGAAAACATGATTTGTGGTTGGTTCCCACTACTTATCATCCCTCAAGTTAA 1512 0.3552 MGFNLHVLISTILGFLLFMLIKIILRSKAKKTNYKLPPGPRKLPLIGNTHQLGALPHQSLAKLAHQYGPLMHMQLGELSCIVISSQEMAKEVMKKHDLNFANRPPLLAAEIITYGYKGMTFSPHGSYWRQMRKICTMELLSPKRVESFRLEREEELASFVKDIILSEGSSINLSEKIDSLAYGLTSRTAFGAEIEGKEKYRKLMKDVSKMAGGFSVADLFPSIGILQVLTGLRKKIDKLHSEMDVILENVVRSHREKNLETRDEEETGEDLVDVLLKLQKHSHLEHPLTDTVIKATILDIFSAGSDTTFTTLEWAMSELVKNPNVMKKAQTEIRKVYNKKGCVDEVSLDKLEYLKSIIKETLRLHAPVSLLLPRQCREKCEINGYEIPAKSKVIVNAWSISRDSKYWNEPMKFIPERFIDSEVDCKGVDFQFIPFGAGRRMCPGITFGIANLEISLANLLYHFDWNIPNGDNADELDMNESFGLNVRRKHDLWLVPTTYHPSS 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01043 503 CDD CYP71-like 66 492 - -
Vifa2g01043 503 Pfam Cytochrome P450 37 484 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g01043 503 PANTHER CYTOCHROME P450 71B11-RELATED 20 497 - -
Vifa2g01043 503 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 435 444 IPR017972 GO:0005506|GO:0016705
Vifa2g01043 503 FunFam Cytochrome P450 71D8 29 496 - -
Vifa2g01043 503 PRINTS E-class P450 group I signature 355 373 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g01043 503 PRINTS E-class P450 group I signature 88 109 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g01043 503 PRINTS E-class P450 group I signature 64 83 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g01043 503 PRINTS E-class P450 group I signature 312 338 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g01043 503 PRINTS E-class P450 group I signature 432 442 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g01043 503 PRINTS E-class P450 group I signature 396 420 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g01043 503 PRINTS E-class P450 group I signature 442 465 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g01043 503 PRINTS E-class P450 group I signature 292 309 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g01043 503 Gene3D Cytochrome P450 22 495 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g01043 503 PRINTS P450 superfamily signature 356 367 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g01043 503 PRINTS P450 superfamily signature 303 320 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g01043 503 PRINTS P450 superfamily signature 433 442 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g01043 503 SUPERFAMILY Cytochrome P450 37 497 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01043 Vifa-Chr2 282184727 282189652 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01043 12 499 Cytochrome P450 AT3G26300 41.165 6.90e-140 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01043 - - gmx:100819247 696.427