Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01038 ATGGATTTTCAAGCAGTTTTCCCTACCACCCTTTTAACCATTTTGTTCCTCTCCATCATTGTGACACTAACACTAAAGAAGAAAATAAAAAAAGTTGACTCAATTCCAAATATACCACCAGGGCCATGGAAGCTACCTATCATAGGAAACATAGCCAATCTTCTTGGCTCTCCACCACATAGAAAACTAAGAGATTTGGCAAACAAATATGGACCATTGATGCATCTTCAACTTGGTGAAGTTTTCTTTATTATTGTTTCTTCAGCAGAATATGCTAAGGAAATAATGAAAACTCATGATGTTATATTTGCATCAAGGCCTCCAAATCTTACCTCAGAGATAATCTTTTATGATTCAACAGATATAGCTTTGGCACCTTATGGTGATTATTGGAGACAACTTAGAAAGATTTGTACTGTTGAACTTTTGAGTGTAAAACGTGTGCAATCTTTTTGGCCTATAAGAGAACAAGAGATGAGTAATCTCGTAAAAAGAATCGCTTCGGAAGAAGGACGAGTGATCAATCTTTCTCAACAAGTTGTGTCAATGATGTTTTCATTCACTTCAAGAGCTGCTTTTGGAAAAAAATACATGGAGCAAGACGAGTTCATATCGGCGGTGAGAGAAATTTTGCAGCTAGCTGGTGGTTTTTTCATTGGTGACTTGTTTCCGTCGGCGAAATGGCTTCAAAATGCCACTGGTATGAGGCCTAAGCTTGAGAAGTTGCATAAAAAAGTTGATAGAATATTTGAGATGATTATAAATGATCATAAAAAGACAAAGTCACGAGATATAGATGGTTTAGTTGAAGGACATGAGGATTTGATTGATGTTCTCTTGAAATTTGAGGAAAGTAACAGCACTAATCAGGAATTTTCCTTAACTCAGAATAATATCAAGGCTATACTCTTTGATATCTTCACCGGCGGAAGTGACACTGCAGCAACAACAATCAACTGGTCAATGGCAGAAATGATGAAAAATCCAAGAGTATTAAAGAAAGCACAAGAAGAAGTGAGAGAGACAATAAAAAAAACAGGAAAACTCAATGAAACATGCATTGATGAGTTAAAATACTTAAAAGCAATAATCAAAGAGGTCTTAAGAATCCACCCTCCAGGTCCACTTTTGATCCCTAGAGAGTGTGCACAAGATTGTGAGATAAATGGTTATCATATACCAAAAAAATGCAAAGTGATAATCAATGCTTGGGCCATTGGAATGGATACAAAATACTGGAATGAGCCAGAGAGGTTTTATCCTGAAAGGTTTATGGATAGTTGTGTTGATTACAAAGGAAATAACTTTGAGTATATTCCATTTGGTGGTGGGAGGAGAATTTGTCCTGGGATGAATTATGGTATGGCGAATGTTGAATTGGCTCTTGCTATGTTGTTGTGTGAGTTTGATTGGAGAGTTCCTGATGGAGTGAAATGTGAGGATTTGGATATGAGTGAATTGTTTGGTGCTTCTGTTATAAGAAAACATGACTTGTACTTGCTTCCTACAATTTACTCTGAATTGCAGTAG 1530 0.3647 MDFQAVFPTTLLTILFLSIIVTLTLKKKIKKVDSIPNIPPGPWKLPIIGNIANLLGSPPHRKLRDLANKYGPLMHLQLGEVFFIIVSSAEYAKEIMKTHDVIFASRPPNLTSEIIFYDSTDIALAPYGDYWRQLRKICTVELLSVKRVQSFWPIREQEMSNLVKRIASEEGRVINLSQQVVSMMFSFTSRAAFGKKYMEQDEFISAVREILQLAGGFFIGDLFPSAKWLQNATGMRPKLEKLHKKVDRIFEMIINDHKKTKSRDIDGLVEGHEDLIDVLLKFEESNSTNQEFSLTQNNIKAILFDIFTGGSDTAATTINWSMAEMMKNPRVLKKAQEEVRETIKKTGKLNETCIDELKYLKAIIKEVLRIHPPGPLLIPRECAQDCEINGYHIPKKCKVIINAWAIGMDTKYWNEPERFYPERFMDSCVDYKGNNFEYIPFGGGRRICPGMNYGMANVELALAMLLCEFDWRVPDGVKCEDLDMSELFGASVIRKHDLYLLPTIYSELQ 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01038 509 Coils Coil 332 352 - -
Vifa2g01038 509 PANTHER OS08G0105600 PROTEIN 62 505 - -
Vifa2g01038 509 Gene3D Cytochrome P450 33 498 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g01038 509 CDD CYP71-like 69 498 - -
Vifa2g01038 509 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 441 450 IPR017972 GO:0005506|GO:0016705
Vifa2g01038 509 SUPERFAMILY Cytochrome P450 39 502 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g01038 509 PRINTS E-class P450 group I signature 67 86 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g01038 509 PRINTS E-class P450 group I signature 298 315 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g01038 509 PRINTS E-class P450 group I signature 402 426 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g01038 509 PRINTS E-class P450 group I signature 448 471 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g01038 509 PRINTS E-class P450 group I signature 361 379 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g01038 509 PRINTS E-class P450 group I signature 318 344 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g01038 509 PRINTS E-class P450 group I signature 183 201 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g01038 509 PRINTS E-class P450 group I signature 91 112 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g01038 509 PRINTS E-class P450 group I signature 438 448 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g01038 509 PRINTS P450 superfamily signature 362 373 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g01038 509 PRINTS P450 superfamily signature 309 326 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g01038 509 PRINTS P450 superfamily signature 439 448 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g01038 509 FunFam Cytochrome P450 71D8 31 502 - -
Vifa2g01038 509 Pfam Cytochrome P450 39 486 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01038 Vifa-Chr2 281233973 281235725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01038 11 505 Cytochrome P450 AT3G26300 40.637 1.80e-133 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01038 - - gmx:100801936 661.759