Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01036 ATGATTGCTCAAACCAAAGTTTCCCTTGATAGGATTGTCAGTTTTCTTCGTCTAGATGATTTGCAGACTGATGTAGTGGAGAAGCTTCCGCAAGGTAGTTCTGATATAGCAGTTGAAATGGTAGATGGAAATTTCTCTTGGGATTTTTCTTCTGTCAATGCAACTTTGAAAAACATAAACCTTAGAGTTTGTCATGGTATGAGGGTTGCTGTTTGTGGTACTGTTGGATCAGGCAAGTCGAGTTTACTTTCTTGTATAATAGGTGAAATACCAAAGATATCTGGTAACTTGAAGGTGTGTGGAACAAAGGCTTATGTTGCGCAATCACCATGGATTCAGAGTGGAAAGATAGAAGAGAACATACTGTTTGGGAGAGAGATGGATAGGGAAAAGTATGAGAAGGTGCTAGAAGCATGTTCGTTGAAGAAAGATTTAGAGGTTTTACCATTTGGTGATCAAACCATTATTGGAGAGAAGGGAATCAATTTGAGTGGTGGACAGAAGCAAAGAGTACAAATAGCGCGTGCACTTTACCAAGATGCCGATATATATCTTCTCGATGATCCCTTTAGTGCTGTTGATGCTCATACAGGATCTCATATCTTTAAGGAGTGTTTGCTTGGCCTTTTGAAAACAAAAACTGTGATATACATAACACATCAAGTAGAGTTCTTACCTGATGCTGATCTGATTCTTGTAATGAAAGAAGGAAGGATAACTCAATCAGGAAAATACAACGACATTCTTACGTCAGGAACCGATTTTATGGAACTTGTAGGTGCACATAGAGCAGCGTTGTCTTCAGTTAAGTCCTTAGAGAGAAGGCCTACATTTAAAACATCCGGAGAAGACACAAGTTCATTAATTGATTTTGAACTTGAGCAAGAAACCGAAAAAGTAGATGATCCAAACGACAAGTTAGATGAAACGATTGTGCCGAAAGGCCAACTTGTTCAAGACGAAGAAAGTGAAAAGGGAAGTGTTGGGTTTAAATTGTTTTGGAAATACATAACAACAGCTTATGGAGGAGCTCTTGTACCTTTCCTATTGCTTTCACAGATACTCACTGTGGTTTTGCAAATTGCAAGCAATTATTGGATGGCTTTGGCAACTCCTGTTTCTGCAACTGAAGAACCTGATATTGGAAACCTTACTCTGATGGTTGTCTATGTTTCTTTGGCTATTGGAAGTTCCTTTGCCACTCTTGGCAGAGCAGTTCTTGCTGTGATAGCTGGATACAAGACTGCCACCATTCTCTTCAATCAAATGCATTTCAGCTTCATACGAGCACCGATGTCATTTTTTGATTCAACCCCAAGTGGAAGAATTCTTAATAGAGCTTCGTCAGACCAAAGTGCAGTAGATATGAACATTTCAAATCTAGTATGGGGTTTCACCTACAATATGGTTCAGCTATTGGGAAGTATTGCTGTGATATCTCAAGCAGCATGGCAGGTGTTCATAGTATTGATTCCTGTAATGGCAGGTTACATTTGGTTCCAGCGATACTACTCAGCATCAGCACGGGAATTGGCACGATTAATTGGTATATGTCAAGCTCCAGTTATACAACACTTTTCTGAAACAATTTCTGGATCAACAACCATAAGAAGTTTTGAGCAAGAATCAAGATTCAATGAAATGAATATGCAATTGATAGACAAATATTCCCAACCTAAATTATACAGTGCTAGTGCAATGCAATGGTTGGATTTAAGATTGGATCTTTTATCCTTTACCATATTTGCCTTCTTCTTGATTTTATTGGTATCTTTTCCAAGTTCAATTGCTGATCCTAGTATTGCGGGATTGGCTGTGACATATGGGATTAATCTAAATGCTATACAAGCTGATTTAGTTCGGTTTCTTTGCAATTTGGAGAACAAAATTATATCTGTAGAAAGAATACTTCAGTACACCTCCATCCCAAGTGAAGCACCCCTTATAATAAAAGACAATCAACCAGATCATTCTTGGCCATCATTCGGAGAGGTTCATATCCAGGATTTACAGGTTCAATATGCTCCTCACCTGCCTGTTGTTTTACACGGACTTACATGCACTTTTACTGCTGGAGCAAAAACTGGCATTGTTGGAAGAACTGGAAGTGGAAAATCAACACTAGTGCAAGCACTTTTCAGACTTGTTGAGCCTATCTCAGGACAAATATTGATAGATAACATCAACATCTCATTGATTGGAATCCATGATTTACGGTCCAGACTGAGCATAATTCCTCAGGATCCAACAATGTTTGAAGGGACTGTAAGGAGCAACCTTGACCCACTAGAAGAGTACACAGATGAACAAATTTGGGAGGCTTTAAATATGTGCCAACTAGGAGATGAAGTGAGGAAGAAAGAAGGAAAGCTCGACTCAACAGTTAGTGAGAATGGAGAAAACTGGAGCATGGGTCAAAGACAGTTGGTTTGCCTCGGCCGTGTTTTACTTAAGAAAAGCAAGATATTAGTGCTTGATGAAGCAACTGCATCAGTTGATACAGCTACAGATAATATTATTCAGCAGACAGTTAAACAACATTTCTCTGATTGCACAGTCATTACCATTGCTCATAGAATAACTTCAATCCTTGATAGCGACATGGTTCTGTTTCTCAGTGAAGGACTTATTGAGGAATATGATTCACCAAAGAAGTTGCTTAAGAACAAATCTTCATCTCTCGCTCAACTAGTTGCAGAATACACAAGGAGGTCAAACACTGGTTTTGGAAGTTGA 2736 0.3893 MIAQTKVSLDRIVSFLRLDDLQTDVVEKLPQGSSDIAVEMVDGNFSWDFSSVNATLKNINLRVCHGMRVAVCGTVGSGKSSLLSCIIGEIPKISGNLKVCGTKAYVAQSPWIQSGKIEENILFGREMDREKYEKVLEACSLKKDLEVLPFGDQTIIGEKGINLSGGQKQRVQIARALYQDADIYLLDDPFSAVDAHTGSHIFKECLLGLLKTKTVIYITHQVEFLPDADLILVMKEGRITQSGKYNDILTSGTDFMELVGAHRAALSSVKSLERRPTFKTSGEDTSSLIDFELEQETEKVDDPNDKLDETIVPKGQLVQDEESEKGSVGFKLFWKYITTAYGGALVPFLLLSQILTVVLQIASNYWMALATPVSATEEPDIGNLTLMVVYVSLAIGSSFATLGRAVLAVIAGYKTATILFNQMHFSFIRAPMSFFDSTPSGRILNRASSDQSAVDMNISNLVWGFTYNMVQLLGSIAVISQAAWQVFIVLIPVMAGYIWFQRYYSASARELARLIGICQAPVIQHFSETISGSTTIRSFEQESRFNEMNMQLIDKYSQPKLYSASAMQWLDLRLDLLSFTIFAFFLILLVSFPSSIADPSIAGLAVTYGINLNAIQADLVRFLCNLENKIISVERILQYTSIPSEAPLIIKDNQPDHSWPSFGEVHIQDLQVQYAPHLPVVLHGLTCTFTAGAKTGIVGRTGSGKSTLVQALFRLVEPISGQILIDNINISLIGIHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALNMCQLGDEVRKKEGKLDSTVSENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNIIQQTVKQHFSDCTVITIAHRITSILDSDMVLFLSEGLIEEYDSPKKLLKNKSSSLAQLVAEYTRRSNTGFGS 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01036 911 CDD ABC_6TM_ABCC_D2 346 640 IPR044726 GO:0140359
Vifa2g01036 911 FunFam ABC transporter C family member 5 310 646 - -
Vifa2g01036 911 Pfam ABC transporter 682 830 IPR003439 GO:0005524
Vifa2g01036 911 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 260 IPR027417 -
Vifa2g01036 911 FunFam ABC transporter C family member 3 648 900 - -
Vifa2g01036 911 Gene3D ABC transporter type 1, transmembrane domain 311 646 IPR036640 GO:0005524|GO:0016020
Vifa2g01036 911 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 2 900 - -
Vifa2g01036 911 FunFam ABC transporter C family member 5 23 270 - -
Vifa2g01036 911 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 348 628 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa2g01036 911 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 38 261 IPR003439 GO:0005524
Vifa2g01036 911 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 656 891 IPR027417 -
Vifa2g01036 911 CDD ABCC_MRP_domain1 38 238 - -
Vifa2g01036 911 Pfam ABC transporter transmembrane region 348 588 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa2g01036 911 SUPERFAMILY ABC transporter transmembrane region 345 647 IPR036640 GO:0005524|GO:0016020
Vifa2g01036 911 Pfam ABC transporter 56 190 IPR003439 GO:0005524
Vifa2g01036 911 ProSitePatterns ABC transporters family signature. 163 177 IPR017871 GO:0005524|GO:0016887
Vifa2g01036 911 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 665 899 IPR003439 GO:0005524
Vifa2g01036 911 Gene3D - 648 901 IPR027417 -
Vifa2g01036 911 SMART AAA_5 691 883 IPR003593 GO:0016887
Vifa2g01036 911 SMART AAA_5 65 238 IPR003593 GO:0016887
Vifa2g01036 911 Gene3D - 16 278 IPR027417 -
Vifa2g01036 911 CDD ABCC_MRP_domain2 663 883 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01036 Vifa-Chr2 280896356 280900082 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01036 663 907 Calmodulin-binding Proteins AT2G36910 28.226 3.23e-29 124