Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01035 ATGGAAGTGGGTGAAAGTAGTAAAACTGAGAACCCTAATTGGGAAGTTGAATTAAGCAAGTATGAGAATGTTATAGCTTCAGGAACCAAATCTATGAAAGTAAAAGCTATGATTAAGCTGCTCAATTACTCCAAACAAGCTCCTGAACATGTATTATCCAACACCATACCATTTCTCATTCAGATTCTTGATCATGGTAACACTGAAAGTCATTCTCTTCCTAATTTACTTCAAGAAGCTGCTGCTTGTTGTTTGAAGTGCATTGCTTGCAGAGGTGATGGTAGTATGGCAGTTGAAATGGGTAGACTTGGTGTTGCACATTCTTTGATGAGATTGTTGCCTCGTGCCGAGGGAAAAATGCAGAAAGTTCTGATAAAATGTTTGTTGGTGGTTGTTATTTTTTGTAAGACAAGTAGGACAGTTGTTGCAGCTAATGGCGGATTAGAAATTGTAATCGGTTTGTTGAATACTTGTAGCAGTGATGTTAGATTGTATTTGTTAGAGATTTTGAGTGCGTTGGCGCTTCGGAGGGAAGTTAGGAAGGAACTTGTAAGGTTAGGAGGTCTTCGTTTTATTGTAGAGGCTGCTGGTGTTGGTAGCATGGTTTCTAGGGAGAGAGCGTGCCAGTCGATTGGATTGATTGGAGTTACGAGACAGGCTAGGCATACACTTGTTGACTTAGGAGTTATACCAGTGCTTGTAGAGTTGTTTCGCGTTGGAGATAACGGTTTGAAGGTTGTAGCTGGTAATACTCTCGGTGTAGTATCGGCTCATGTTGATTACATTAGACCAGTTGCTCAAGCTGGGGCTATTCCTCTTTACGCCGAGCTTCTTCAAGGAGGTGATGCTTCTGGTAAGGAGATAGCCGAGGATGTGTTTTGTATATTGGGTGTTGCTGAGGCTAATGCTGTTGAAATTGTTGGTCACTTGGTGAGAATTCTTAGAGAAGGTGACGATGGAGCTAAAGCAGCAGCTGCTGATGTGATATGGGATTTATCGGGATACAAGCACACAATATCTGTGATTCGGGATTCAGGCGCGATCCTCATTCTTGTTGAACTTTTGGACCATGGGAGTGAAGAAATAAAGTTGAACGTTTCGGGGGCATTTGCTCAACTAAGCTATGATGAAGCTGGTAGAACGGCCCTTGCCGATGCTGGGGCAATTCCGATTCTCATTGACTTGCTACTCAACGAGACCGAGGAACTAAGGGATAATGTTGTTGAGGCTCTCTCCAATTTTCATGAAGAACCGTTATACCGTGATAGAGTATCTCATGTAGTTAATGTTCCTTCGTTCAGAAGTTTGCAGAATAGACTAATCAGTATTCGTGCATCAAACGAGCATATGACTAGATCTTTACGTAGAACGAGTGTTGAGCAGCTCATTTGGAACCCTGATCATGTTTAA 1410 0.4213 MEVGESSKTENPNWEVELSKYENVIASGTKSMKVKAMIKLLNYSKQAPEHVLSNTIPFLIQILDHGNTESHSLPNLLQEAAACCLKCIACRGDGSMAVEMGRLGVAHSLMRLLPRAEGKMQKVLIKCLLVVVIFCKTSRTVVAANGGLEIVIGLLNTCSSDVRLYLLEILSALALRREVRKELVRLGGLRFIVEAAGVGSMVSRERACQSIGLIGVTRQARHTLVDLGVIPVLVELFRVGDNGLKVVAGNTLGVVSAHVDYIRPVAQAGAIPLYAELLQGGDASGKEIAEDVFCILGVAEANAVEIVGHLVRILREGDDGAKAAAADVIWDLSGYKHTISVIRDSGAILILVELLDHGSEEIKLNVSGAFAQLSYDEAGRTALADAGAIPILIDLLLNETEELRDNVVEALSNFHEEPLYRDRVSHVVNVPSFRSLQNRLISIRASNEHMTRSLRRTSVEQLIWNPDHV 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01035 469 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 346 388 IPR000225 GO:0005515
Vifa2g01035 469 Pfam Armadillo/beta-catenin-like repeat 379 413 IPR000225 GO:0005515
Vifa2g01035 469 Coils Coil 393 413 - -
Vifa2g01035 469 SMART arm_5 258 298 IPR000225 GO:0005515
Vifa2g01035 469 SMART arm_5 376 416 IPR000225 GO:0005515
Vifa2g01035 469 SMART arm_5 43 90 IPR000225 GO:0005515
Vifa2g01035 469 SMART arm_5 135 175 IPR000225 GO:0005515
Vifa2g01035 469 SMART arm_5 335 375 IPR000225 GO:0005515
Vifa2g01035 469 SMART arm_5 217 257 IPR000225 GO:0005515
Vifa2g01035 469 Gene3D - 335 429 IPR011989 -
Vifa2g01035 469 SUPERFAMILY ARM repeat 18 416 IPR016024 -
Vifa2g01035 469 Gene3D - 23 334 IPR011989 -
Vifa2g01035 469 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4 311 425 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01035 265 431 U-box Gene Family AT2G23140 27.907 2.47e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01035 - - gmx:100819735 609.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01035 2 280893212 280894621 Vifa2g01035 2 280893212 280894621 ECH