Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01031 ATGTGTGAGACTTCACTCACCTGTGCTCGAGAACAGTTGCTTCCACTAGCCCGTGATCATTTGCTTCCATTAATAAAGGAAGCAGTCAACATGATTAGGGGTGTCCCTAAAGAAATTGCTGAAATGAAAGATGAACTTGAACGCATTGAAGACTTCATCTACGAAGCAGATAGAATGGCTGATTCACAGAAAGACAATACTAAGCACGAAATCAAAGCAATGATCAAACAGTTGATAGAAGCTTCTTTTTACATACAAGATGTCATTGATGAATACTTGATCCGTGAGGAGCAACAACTTCCAGATCCTGGATGTGCTGCTGTTGCTAACTATTGTGCTAACTATGTCAAAACCAAGATTCTGCGTCTCCACATAGCCTACAAGATTCAAAACATCAAATCCCGGATCGCTGAAATAAAAGATACATTCCAAATCCATTCTTTTTGGGAAATAGGATCAAGCAGCTCTTCAGAAAGTCCAAATGCCACGTTATTGCAAAACCTTCGGGAGGCTCCTTTTTACATGGATGGAGCTGATGTTGTAGGCTTTGATGAGCCAAGACAGATACTGATTGATTGGTTGGTAAAGGGAAGAGCAGAGCGCACAGCCGTCTGCCTTGTTGGAATGGGAGGACAGGGTAAAACCACTCTTGCCAAACAAGTTTTTGACAACACAAAGGTCGTTAATCACTTTGACTGTCATGCCTGGATTATAGTATCTCAATCATACAATATTGAAAAATTGTTGAGGGACATTTTGTGCCAGTTTTACAAACAACAAAGACTCGATCCTGATCAACGTATTCATCAAATGGATCGAAAATCATTAGTTGATGAAGTGAGAGACTACTTGCTGAGAAAAAGGTATGTTGTTGTGTTTGATGATGTATGGAACATTAATTTTTGGGATGATATTGAATTTGCTATGATTGATAAAAAAAATGGTTCTAAGGTATTAATCACAACAAGGAATATGGATGTTGCAAATGCTTGTAAGACATCTTCTTTTGTTGAAGTGCTTCAGCTGAAAAGTTTAACTAAAGAACAATCTTTAGAATTGTTCAATAAGAAGGCATTCCATGATTTGAACGGATATTGTCCTGAAAATCTTATGGACATATCTTCTAAAATTATTGAAAAATGCAATGGATTACCACTAGCAATTGTAGTCATTGGTGGTCTTTTGTCTCAGAAAGATAGAAATAAATTTGAATGGGATAGGTTTATTGAACATGTGAATTCAGAGTTGAATAAGGATTCTCGGATAAATCGTATTTTAGCATTAAGTTACCATGATTTGCCTTACAATCTTAAGCCATGTTTGTTATATTTTGGAATGTATCCTGAAGACTACACAGTTGGCGCAAAAATGTTGATTAATCAATGGATAGCTGAAGGGTTTGTGAAAGAGGATAAGGTACAAACTTTAGAACAAGTTGCAGAAGGATATTTAATAGAGTTGATCCATAGAAGTTTAGTGCAAGTAGTTTTTATGGGTGTTGATGGTAGACCAAAACTTTGTTGTGTTCATGATCTAGTGCATGCAATGATCCTTGAAAAATGCAAGGACTTAAGTTTTTGTAAGAATATTAGTGGGGATGGTGAGTTGTCTATTCTTCAATAG 1623 0.366 MCETSLTCAREQLLPLARDHLLPLIKEAVNMIRGVPKEIAEMKDELERIEDFIYEADRMADSQKDNTKHEIKAMIKQLIEASFYIQDVIDEYLIREEQQLPDPGCAAVANYCANYVKTKILRLHIAYKIQNIKSRIAEIKDTFQIHSFWEIGSSSSSESPNATLLQNLREAPFYMDGADVVGFDEPRQILIDWLVKGRAERTAVCLVGMGGQGKTTLAKQVFDNTKVVNHFDCHAWIIVSQSYNIEKLLRDILCQFYKQQRLDPDQRIHQMDRKSLVDEVRDYLLRKRYVVVFDDVWNINFWDDIEFAMIDKKNGSKVLITTRNMDVANACKTSSFVEVLQLKSLTKEQSLELFNKKAFHDLNGYCPENLMDISSKIIEKCNGLPLAIVVIGGLLSQKDRNKFEWDRFIEHVNSELNKDSRINRILALSYHDLPYNLKPCLLYFGMYPEDYTVGAKMLINQWIAEGFVKEDKVQTLEQVAEGYLIELIHRSLVQVVFMGVDGRPKLCCVHDLVHAMILEKCKDLSFCKNISGDGELSILQ 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01031 540 Pfam Rx N-terminal domain 20 99 IPR041118 -
Vifa2g01031 540 CDD RX-CC_like 19 141 IPR038005 -
Vifa2g01031 540 Gene3D - 344 429 IPR042197 -
Vifa2g01031 540 PANTHER DISEASE RESISTANCE PROTEIN RP 41 523 IPR044974 GO:0006952
Vifa2g01031 540 PRINTS Disease resistance protein signature 381 395 - -
Vifa2g01031 540 PRINTS Disease resistance protein signature 203 218 - -
Vifa2g01031 540 PRINTS Disease resistance protein signature 283 297 - -
Vifa2g01031 540 Gene3D - 16 126 - -
Vifa2g01031 540 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 444 IPR027417 -
Vifa2g01031 540 Gene3D - 430 521 IPR036388 -
Vifa2g01031 540 Gene3D - 138 339 IPR027417 -
Vifa2g01031 540 FunFam Probable disease resistance protein At1g61300 162 335 - -
Vifa2g01031 540 FunFam Probable disease resistance protein At1g63360 430 519 - -
Vifa2g01031 540 Pfam NB-ARC domain 190 418 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01031 Vifa-Chr2 280547947 280549569 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01031 204 400 WRKY Transcription Factor Family AT5G45050 29.949 2.75e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01031 K13457 - mtr:25489074 575.089