Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01027 ATGCAAACATCACAGGAACATGGAATTTCTTACGGCTCTGACAGGTTCTACGTTGAGCCTGTGCAGAATATTGAGTCATATTGCTTACCCTCAGGTGAGAATCTTGACAACTATTCTTCCTCTGATAACAGCAGCCAAGCATTCTATCCTTTTCAGCAGACTCTAGAACCGTATAGCGCTCATGAATCTGCTTCAACGAGTAATAACAGTTTCCCTTACCAAAATTCTCCGACTACTCTCAGTTTCTCTCGGAACAATAGTCCGGTGTCGAAGCTAGAGTCAAATTCATGCGTGTTAAGCCAACAAAATTCTCTTGAATTTGTTAACGGTTCGCCTGAGGGTGAAGATTCTTACTTGACACATGATTTTGATGACCTCAGGCATAAGATACAAGAGCTCAAATCTGTTATGCTCGGACCGAACGAGGATATGCTAGATATGTATGATACTGAAATTCGAGAAGAGGCTGCTTTGTTCTCGTTAGAGGCTGAAAACTGGAAGAGAAACACGGAGATCGTATCTCGAGGGGACTTGAAAGAAATGCTTTATACTTGTGCAAAAGCAGTAGCTGTGAATGATATGGACACAATTGAATGGATGGTTGCTGAGTTACGTAAAATCGTATCCATTTCAGGAAGTCCAATCCAACGATTGGGAGCGTATATGTTGGAGGCTCTTGTTTCCAGGATGGCTTCTTCCGGAAGTACGATCTACAATTCGTTGAAATGTAGCGAGCCTACCGGTAATGAACTACTTTCCTACATGCATGTGCTTTATGAAATATGTCCGTACTTTAAGTTTGGGTATATGTCGGCAAATGGAGCGATTGCTGAAGCTATGAAGGATGAAAGTGAAATACACGTAATTGATTTTCAAATTGCACAAGGAACTCAGTGGGTTAGCCTAATTCAGGCTCTTGCTCGCCGGCCTGAAGGACCCCCGAAAATTAGAATAACAGGTGTTGATGACACGTTTTCAGCTTACGCCCGCGGCGGGGGTGTTGATATAGTGGGGGAAAGGTTATCGGCACTTGCACAATCATGTCATGTTCCTTTTGAGTTCCATGCTGTTAGAGTTTCTGCTTCTGAAGTCCAACTCGAAGACTTTGAACTTCGACCTTACGAAGCCGTGGCAGTGAATTTCGCCATTATGCTACACCACGTGCCAGACGAGACCGTAAACATTCATAATCATCGCGACAGGTTATTGCATTTGGCTAAGTATTTCGCTCCAAAGGTGGTGACTCTAGTCGAGCAAGAATTCGACACCAACAACGCTCCGTTCTTGCCGCGTTTTGTCGAGACAATGAACTACTACTCAGCCGTCTACGAATCAATCGACGTTGTGCTTCCAAGGGATCACAAAGAGAGGATTAACGTCGAACAGCACTGTTTGGCTCGTGAAGTTGTCAACTTAGTAGCCTGCGAAGGAGAAGAAAGAGTAGAACGTCACGAGCTTCTAACTAAGTGGCAAACACGTTTCATAATGGCTGGATTCACGCAATATCCGTTGAGCTCGTTCATCAACTCTTCAATCAAGAATCTTCTCGACAGCTACCGCGGACATTACACTCTTGAAGAGAGAGATGGTGCACTATATCTTGGTTGGATGAATCAACCTCTTATTGTTTCTTGTGCTTGGAGATGA 1647 0.439 MQTSQEHGISYGSDRFYVEPVQNIESYCLPSGENLDNYSSSDNSSQAFYPFQQTLEPYSAHESASTSNNSFPYQNSPTTLSFSRNNSPVSKLESNSCVLSQQNSLEFVNGSPEGEDSYLTHDFDDLRHKIQELKSVMLGPNEDMLDMYDTEIREEAALFSLEAENWKRNTEIVSRGDLKEMLYTCAKAVAVNDMDTIEWMVAELRKIVSISGSPIQRLGAYMLEALVSRMASSGSTIYNSLKCSEPTGNELLSYMHVLYEICPYFKFGYMSANGAIAEAMKDESEIHVIDFQIAQGTQWVSLIQALARRPEGPPKIRITGVDDTFSAYARGGGVDIVGERLSALAQSCHVPFEFHAVRVSASEVQLEDFELRPYEAVAVNFAIMLHHVPDETVNIHNHRDRLLHLAKYFAPKVVTLVEQEFDTNNAPFLPRFVETMNYYSAVYESIDVVLPRDHKERINVEQHCLAREVVNLVACEGEERVERHELLTKWQTRFIMAGFTQYPLSSFINSSIKNLLDSYRGHYTLEERDGALYLGWMNQPLIVSCAWR 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01027 548 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 119 541 IPR005202 -
Vifa2g01027 548 Pfam GRAS domain family 178 548 IPR005202 -
Vifa2g01027 548 ProSiteProfiles GRAS family profile. 169 548 IPR005202 -
Vifa2g01027 548 MobiDBLite consensus disorder prediction 59 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01027 Vifa-Chr2 279429772 279431418 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01027 1 548 GRAS Transcription Factor Family AT1G50600 53.680 0.0 578
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa2g01027 GRAS 6.3e-129 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01027 - - gmx:100785400 850.506