Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01026 ATGCTCGGACCGAACGAGGATATGCTAGATATGTATGATACTGAAATTCGAGAAGAGGCTGCTTTGTTCTCGTTAGAGGCTGAAAACTGGAAGAGAAACACGGAGATCGTATCTCGAGGGGACTTGAAAGAAATGCTTTATACTTGTGCAAAAGCAGTAGCTGTGAATGATATGGACACAATTGAATGGATGGTTGCTGAGTTACGTAAAATCGTATCCATTTCAGGAAGTCCAATCCAACGATTGGGAGCGTATATGTTGGAGGCTCTTGTTTCCAGGATGGCTTCTTCCGGAAGTACGATCTACAATTCGTTGAAATGTAGCGAGCCTACCGGTAATGAACTACTTTCCTACATGCATGTGCTTTATGAAATATGTCCGTACTTTAAGTTTGGGTATATGTCGGCAAATGGAGCGATTGCTGAAGCTATGAAGGATGAAAGTGAAATACACGTAATTGATTTTCAAATTGCACAAGGAACTCAGTGGGTTAGCCTAATTCAGGCTCTTGCTCGCCGGCCTGAAGGACCCCCGAAAATTAGAATAACAGGTGTTGATGACACGTTTTCAGCTTACGCCCGCGGCGGGGGTGTTGATATAGTGGGGGAAAGGTTATCGGCACTTGCACAATCATGTCATGTTCCTTTTGAGTTCCATGCTGTTAGAGTTTCTGCTTCTGAAGTCCAACTCGAAGACTTTGAACTTCGACCTTACGAAGCCGTGGCAGTGAATTTCGCCATTATGCTACACCACGTGCCAGACGAGACCGTAAACATTCATAATCATCGCGACAGGTTATTGCATTTGGCTAAGTATTTCGCTCCAAAGGTGGTGACTCTAGTCGAGCAAGAATTCGACACCAACAACGCTCCGTTCTTGCCGCGTTTTGTCGAGACAATGAACTACTACTCAGCCGTCTACGAATCAATCGACGTTGTGCTTCCAAGGGATCACAAAGAGAGGATTAACGTCGAACAGCACTGTTTGGCTCGTGAAGTTGTCAACTTAGTAGCCTGCGAAGGAGAAGAAAGAGTAGAACGTCACGAGCTTCTAACTAAGTGGCAAACACGTTTCATAATGGCTGGATTCACGCAATATCCGTTGAGCTCGTTCATCAACTCTTCAATCAAGAATCTTCTCGACAGCTACCGCGGACATTACACTCTTGAAGAGAGAGATGGTGCACTATATCTTGGTTGGATGAATCAACCTCTTATTGTTTCTTGTGCTTGGAGATGA 1239 0.4463 MLGPNEDMLDMYDTEIREEAALFSLEAENWKRNTEIVSRGDLKEMLYTCAKAVAVNDMDTIEWMVAELRKIVSISGSPIQRLGAYMLEALVSRMASSGSTIYNSLKCSEPTGNELLSYMHVLYEICPYFKFGYMSANGAIAEAMKDESEIHVIDFQIAQGTQWVSLIQALARRPEGPPKIRITGVDDTFSAYARGGGVDIVGERLSALAQSCHVPFEFHAVRVSASEVQLEDFELRPYEAVAVNFAIMLHHVPDETVNIHNHRDRLLHLAKYFAPKVVTLVEQEFDTNNAPFLPRFVETMNYYSAVYESIDVVLPRDHKERINVEQHCLAREVVNLVACEGEERVERHELLTKWQTRFIMAGFTQYPLSSFINSSIKNLLDSYRGHYTLEERDGALYLGWMNQPLIVSCAWR 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01026 412 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 33 405 IPR005202 -
Vifa2g01026 412 Pfam GRAS domain family 42 412 IPR005202 -
Vifa2g01026 412 ProSiteProfiles GRAS family profile. 33 412 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01026 Vifa-Chr2 279429772 279431010 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01026 32 412 GRAS Transcription Factor Family AT1G50600 66.929 0.0 565
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa2g01026 GRAS 2.4e-129 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01026 - - gmx:100805672 679.093