Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01025 ATGGATGCCGACGCCGGTGAAGCTCAATTCCGGCAACAAACTCTCGGAGAGATGGATGACAAACACCACGATCCAAAACCAGATTCTGCTTCCGACGGACCTGCCACCTCCGGAAACACCAGCGGAGCTAGATACAAGCTGATGTCCCCGGCGAAGCTCCCGATCTCTAGGTCACCGATTTTAACTATTCCTCCAGGACTAAGTCCGACTTCCTTTCTAGAATCACCCGTTCTACTCTCAAACATGAAGGTAGAACCGTCACCTACAACAGGTTCCCTTCCTAGGCTTCAACAAACATCGCATGGTTTTATGACTTCTTTCACGTCTGCTGCGTTTCCTGTAACCACTGTATGCTACAATACTAATGCTGTTGATGACGGAAAATCCAGCTTCTTTGAGTTTAAACCGCACAATAGATCAAATATGGTTCCTGCTAACTTTGACAACCATGCATGTGAAAAATCTACTCAAATTGACGGTCAAGGAAAGGTTCAAACTTTTGTCTCGTTACCGTTAGTCAAAAGTGAAATGGCAGTCCCTTCAGATGAAATAAGTCTATCATCATCGCCTCTTCAAATGGTTACTTCAGGGGCTAGTGCTCATGTTGAAGTCGAGTTGGACGAATCAAACCCCAGTGGCAACATAGGAACCGGGCTTCAAGCATCACAAGTTGATGGTAGAGGCAGTGGACTTTCAGTTGCTGCTGACAAGGTGTCTGATGACGGATACAATTGGCGAAAATATGGGCAGAAGCTTGTTAAAGGATGTGAATTTCCGCGCAGTTATTACAAATGCACACATCCTAACTGTGAAGTAAAGAAACTCTTTGAACGCTCTCATGATGGCCAAATCACTGAGATAGTTTACAAGGGAACACATGATCATCCTAAACCTCAACCAAGCCGTCGATACTCTGGGGGAAATCTTATGTCTGTGCAAGAAGATAGATCTTTGATTAGCCGTGACGCTGAGCGTGATAGTACTCCAGAGCTATCACCTATAGCAACAAATGATGGTAGTCCAGAGGGTGCAGGGTTTTTGTCAAACCGGAATAATGATGAGGCTGATGAAGATGATCCTTTCTCAAAGCGAAGAAAAATGGATCTTGACATCACTCCTGTAGTTAAGCCTATCCGGGAGCCACGGGTTGTTGTACAGACTCTGAGTGAGGTTGACATATTGGATGATGGTTATCGCTGGCGTAAATATGGGCAGAAGGTGGTAAGAGGCAATCCTAACCCTAGGAGTTATTACAAATGCACAAATGCTGGTTGCCCGGTTAGAAAACACGTGGAGAGAGCATCTCATGATCCAAAAGCTGTAATTACCACATACGAGGGTAAACACAATCATGATGTACCAACTGCTAGGAATAATAGTCATGACATGGCAGGACCATCAGCTGCAGGTGGTCATCAGGCACGAATTCGGCAAGAAGAAAGCGATACTATTAGCCTCGACCTTGGAATGGGCATTAGCCCAAACGCTGAAAATAGATCAAACAATCAAGGGAGGATGATGATGCGTAATGAATACGGCGACGGCCAAACTCACGCCGGCAATTCAAGTTTCAAGTTTGTTCATACTGCACCGCCTCCGGGATACTATGGTGTACTAAATAACAACTCAAATCCATATGGTTCTAGAGAAAATCCAAGTGATAGTTATCCTTGCCCACAGAACATGGGAAGAATACTAATGGGTCCTTAA 1710 0.4491 MDADAGEAQFRQQTLGEMDDKHHDPKPDSASDGPATSGNTSGARYKLMSPAKLPISRSPILTIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLPRLQQTSHGFMTSFTSAAFPVTTVCYNTNAVDDGKSSFFEFKPHNRSNMVPANFDNHACEKSTQIDGQGKVQTFVSLPLVKSEMAVPSDEISLSSSPLQMVTSGASAHVEVELDESNPSGNIGTGLQASQVDGRGSGLSVAADKVSDDGYNWRKYGQKLVKGCEFPRSYYKCTHPNCEVKKLFERSHDGQITEIVYKGTHDHPKPQPSRRYSGGNLMSVQEDRSLISRDAERDSTPELSPIATNDGSPEGAGFLSNRNNDEADEDDPFSKRRKMDLDITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARNNSHDMAGPSAAGGHQARIRQEESDTISLDLGMGISPNAENRSNNQGRMMMRNEYGDGQTHAGNSSFKFVHTAPPPGYYGVLNNNSNPYGSRENPSDSYPCPQNMGRILMGP 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01025 569 Gene3D WRKY domain 379 455 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa2g01025 569 Gene3D WRKY domain 231 299 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa2g01025 569 MobiDBLite consensus disorder prediction 538 558 - -
Vifa2g01025 569 Pfam WRKY DNA -binding domain 395 451 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g01025 569 Pfam WRKY DNA -binding domain 240 296 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g01025 569 ProSiteProfiles WRKY domain profile. 234 298 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g01025 569 SUPERFAMILY WRKY DNA-binding domain 237 298 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa2g01025 569 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 75 493 IPR044810 GO:0003700
Vifa2g01025 569 MobiDBLite consensus disorder prediction 1 44 - -
Vifa2g01025 569 MobiDBLite consensus disorder prediction 322 364 - -
Vifa2g01025 569 SUPERFAMILY WRKY DNA-binding domain 386 454 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa2g01025 569 FunFam WRKY transcription factor 230 299 - -
Vifa2g01025 569 MobiDBLite consensus disorder prediction 288 309 - -
Vifa2g01025 569 FunFam WRKY transcription factor 33 381 447 - -
Vifa2g01025 569 SMART WRKY_cls 239 297 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g01025 569 SMART WRKY_cls 394 453 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g01025 569 MobiDBLite consensus disorder prediction 538 569 - -
Vifa2g01025 569 MobiDBLite consensus disorder prediction 449 526 - -
Vifa2g01025 569 ProSiteProfiles WRKY domain profile. 389 454 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g01025 569 MobiDBLite consensus disorder prediction 14 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01025 Vifa-Chr2 279252858 279257382 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01025 48 569 WRKY Transcription Factor Family AT4G26640 54.137 2.50e-178 512
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa2g01025 WRKY 1.4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01025 - - gmx:100781491 878.241