Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01024 ATGGATGCCGACGCCGGTGAAGCTCAATTCCGGCAACAAACTCTCGGAGAGATGGATGACAAACACCACGATCCAAAACCAGATTCTGCTTCCGACGGACCTGCCACCTCCGGAAACACCAGCGGAGCTAGATACAAGCTGATGTCCCCGGCGAAGCTCCCGATCTCTAGGTCACCGATTTTAACTATTCCTCCAGGACTAAGTCCGACTTCCTTTCTAGAATCACCCGTTCTACTCTCAAACATGAAGGTAGAACCGTCACCTACAACAGGTTCCCTTCCTAGGCTTCAACAAACATCGCATGGTTTTATGACTTCTTTCACGTCTGCTGCGTTTCCTGTAACCACTGTATGCTACAATACTAATGCTGTTGATGACGGAAAATCCAGCTTCTTTGAGTTTAAACCGCACAATAGATCAAATATGGTTCCTGCTAACTTTGACAACCATGCATGTGAAAAATCTACTCAAATTGACGGTCAAGGAAAGGTTCAAACTTTTGTCTCGTTACCGTTAGTCAAAAGTGAAATGGCAGTCCCTTCAGATGAAATAAGTCTATCATCATCGCCTCTTCAAATGGTTACTTCAGGGGCTAGTGCTCATGTTGAAGTCGAGTTGGACGAATCAAACCCCAGTGGCAACATAGGAACCGGGCTTCAAGCATCACAAGTTGATGGTAGAGGCAGTGGACTTTCAGTTGCTGCTGACAAGGTGTCTGATGACGGATACAATTGGCGAAAATATGGGCAGAAGCTTGTTAAAGGATGTGAATTTCCGCGCAGTTATTACAAATGCACACATCCTAACTGTGAAGTAAAGAAACTCTTTGAACGCTCTCATGATGGCCAAATCACTGAGATAGTTTACAAGGGAACACATGATCATCCTAAACCTCAACCAAGCCGTCGATACTCTGGGGGAAATCTTATGTCTGTGCAAGAAGATAGATCTTTGATTAGCCGTGACGATAAAGGCTTTAATAATTATGGTCAGATGTCTCATGCAGCTGAGCGTGATAGTACTCCAGAGCTATCACCTATAGCAACAAATGATGGTAGTCCAGAGGGTGCAGGGTTTTTGTCAAACCGGAATAATGATGAGGCTGATGAAGATGATCCTTTCTCAAAGCGAAGCAGAAAAATGGATCTTGACATCACTCCTGTAGTTAAGCCTATCCGGGAGCCACGGGTTGTTGTACAGACTCTGAGTGAGGTTGACATATTGGATGATGGTTATCGCTGGCGTAAATATGGGCAGAAGGTGGTAAGAGGCAATCCTAACCCTAGGAGTTATTACAAATGCACAAATGCTGGTTGCCCGGTTAGAAAACACGTGGAGAGAGCATCTCATGATCCAAAAGCTGTAATTACCACATACGAGGGTAAACACAATCATGATGTACCAACTGCTAGGAATAATAGTCATGACATGGCAGGACCATCAGCTGCAGGTGGTCATCAGGCACGAATTCGGCAAGAAGAAAGCGATACTATTAGCCTCGACCTTGGAATGGGCATTAGCCCAAACGCTGAAAATAGATCAAACAATCAAGGGAGGATGATGATGCGTAATGAATACGGCGACGGCCAAACTCACGCCGGCAATTCAAGTTTCAAGTTTGTTCATACTGCACCGCCTCCGGGATACTATGGTGTACTAAATAACAACTCAAATCCATATGGTTCTAGAGAAAATCCAAGTGATAGTTATCCTTGCCCACAGAACATGGGAAGAATACTAATGGGTCCTTAA 1752 0.4469 MDADAGEAQFRQQTLGEMDDKHHDPKPDSASDGPATSGNTSGARYKLMSPAKLPISRSPILTIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLPRLQQTSHGFMTSFTSAAFPVTTVCYNTNAVDDGKSSFFEFKPHNRSNMVPANFDNHACEKSTQIDGQGKVQTFVSLPLVKSEMAVPSDEISLSSSPLQMVTSGASAHVEVELDESNPSGNIGTGLQASQVDGRGSGLSVAADKVSDDGYNWRKYGQKLVKGCEFPRSYYKCTHPNCEVKKLFERSHDGQITEIVYKGTHDHPKPQPSRRYSGGNLMSVQEDRSLISRDDKGFNNYGQMSHAAERDSTPELSPIATNDGSPEGAGFLSNRNNDEADEDDPFSKRSRKMDLDITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARNNSHDMAGPSAAGGHQARIRQEESDTISLDLGMGISPNAENRSNNQGRMMMRNEYGDGQTHAGNSSFKFVHTAPPPGYYGVLNNNSNPYGSRENPSDSYPCPQNMGRILMGP 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01024 583 FunFam WRKY transcription factor 33 395 461 - -
Vifa2g01024 583 MobiDBLite consensus disorder prediction 288 308 - -
Vifa2g01024 583 MobiDBLite consensus disorder prediction 552 583 - -
Vifa2g01024 583 ProSiteProfiles WRKY domain profile. 234 298 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g01024 583 MobiDBLite consensus disorder prediction 463 540 - -
Vifa2g01024 583 FunFam WRKY transcription factor 230 299 - -
Vifa2g01024 583 SUPERFAMILY WRKY DNA-binding domain 237 298 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa2g01024 583 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 75 507 IPR044810 GO:0003700
Vifa2g01024 583 ProSiteProfiles WRKY domain profile. 403 468 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g01024 583 MobiDBLite consensus disorder prediction 1 44 - -
Vifa2g01024 583 MobiDBLite consensus disorder prediction 552 572 - -
Vifa2g01024 583 MobiDBLite consensus disorder prediction 321 379 - -
Vifa2g01024 583 SMART WRKY_cls 408 467 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g01024 583 SMART WRKY_cls 239 297 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g01024 583 Pfam WRKY DNA -binding domain 240 296 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g01024 583 Pfam WRKY DNA -binding domain 409 465 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa2g01024 583 Gene3D WRKY domain 231 299 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa2g01024 583 Gene3D WRKY domain 393 469 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa2g01024 583 MobiDBLite consensus disorder prediction 364 379 - -
Vifa2g01024 583 SUPERFAMILY WRKY DNA-binding domain 400 468 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa2g01024 583 MobiDBLite consensus disorder prediction 14 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01024 Vifa-Chr2 279252858 279257382 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01024 48 583 WRKY Transcription Factor Family AT4G26640 54.659 2.40e-180 517
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa2g01024 WRKY 1.4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01024 - - gmx:100781491 889.026