Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa2g01023 | ATGGATGCCGACGCCGGTGAAGCTCAATTCCGGCAACAAACTCTCGGAGAGATGGATGACAAACACCACGATCCAAAACCAGATTCTGCTTCCGACGGACCTGCCACCTCCGGAAACACCAGCGGAGCTAGATACAAGCTGATGTCCCCGGCGAAGCTCCCGATCTCTAGGTCACCGATTTTAACTATTCCTCCAGGACTAAGTCCGACTTCCTTTCTAGAATCACCCGTTCTACTCTCAAACATGAAGGTAGAACCGTCACCTACAACAGGTTCCCTTCCTAGGCTTCAACAAACATCGCATGGTTTTATGACTTCTTTCACGTCTGCTGCGTTTCCTGTAACCACTGTATGCTACAATACTAATGCTGTTGATGACGGAAAATCCAGCTTCTTTGAGTTTAAACCGCACAATAGATCAAATATGGTTCCTGCTAACTTTGACAACCATGCATGTGAAAAATCTACTCAAATTGACGGTCAAGGAAAGGTTCAAACTTTTGTCTCGTTACCGTTAGTCAAAAGTGAAATGGCAGTCCCTTCAGATGAAATAAGTCTATCATCATCGCCTCTTCAAATGGTTACTTCAGGGGCTAGTGCTCATGTTGAAGTCGAGTTGGACGAATCAAACCCCAGTGGCAACATAGGAACCGGGCTTCAAGCATCACAAGTTGATGGTAGAGGCAGTGGACTTTCAGTTGCTGCTGACAAGGTGTCTGATGACGGATACAATTGGCGAAAATATGGGCAGAAGCTTGTTAAAGGATGTGAATTTCCGCGCAGTTATTACAAATGCACACATCCTAACTGTGAAGTAAAGAAACTCTTTGAACGCTCTCATGATGGCCAAATCACTGAGATAGTTTACAAGGGAACACATGATCATCCTAAACCTCAACCAAGCCGTCGATACTCTGGGGGAAATCTTATGTCTGTGCAAGAAGATAGATCTTTGATTAGCCGTGACGATAAAGGCTTTAATAATTATGGTCAGATGTCTCATGCAGCTGAGCGTGATAGTACTCCAGAGCTATCACCTATAGCAACAAATGATGGTAGTCCAGAGGGTGCAGGGTTTTTGTCAAACCGGAATAATGATGAGGCTGATGAAGATGATCCTTTCTCAAAGCGAAGAAAAATGGATCTTGACATCACTCCTGTAGTTAAGCCTATCCGGGAGCCACGGGTTGTTGTACAGACTCTGAGTGAGGTTGACATATTGGATGATGGTTATCGCTGGCGTAAATATGGGCAGAAGGTGGTAAGAGGCAATCCTAACCCTAGGAGTTATTACAAATGCACAAATGCTGGTTGCCCGGTTAGAAAACACGTGGAGAGAGCATCTCATGATCCAAAAGCTGTAATTACCACATACGAGGGTAAACACAATCATGATGTACCAACTGCTAGGAATAATAGTCATGACATGGCAGGACCATCAGCTGCAGGTGGTCATCAGGCACGAATTCGGCAAGAAGAAAGCGATACTATTAGCCTCGACCTTGGAATGGGCATTAGCCCAAACGCTGAAAATAGATCAAACAATCAAGGGAGGATGATGATGCGTAATGAATACGGCGACGGCCAAACTCACGCCGGCAATTCAAGTTTCAAGTTTGTTCATACTGCACCGCCTCCGGGATACTATGGTGTACTAAATAACAACTCAAATCCATATGGTTCTAGAGAAAATCCAAGTGATAGTTATCCTTGCCCACAGAACATGGGAAGAATACTAATGGGTCCTTAA | 1749 | 0.4465 | MDADAGEAQFRQQTLGEMDDKHHDPKPDSASDGPATSGNTSGARYKLMSPAKLPISRSPILTIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLPRLQQTSHGFMTSFTSAAFPVTTVCYNTNAVDDGKSSFFEFKPHNRSNMVPANFDNHACEKSTQIDGQGKVQTFVSLPLVKSEMAVPSDEISLSSSPLQMVTSGASAHVEVELDESNPSGNIGTGLQASQVDGRGSGLSVAADKVSDDGYNWRKYGQKLVKGCEFPRSYYKCTHPNCEVKKLFERSHDGQITEIVYKGTHDHPKPQPSRRYSGGNLMSVQEDRSLISRDDKGFNNYGQMSHAAERDSTPELSPIATNDGSPEGAGFLSNRNNDEADEDDPFSKRRKMDLDITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARNNSHDMAGPSAAGGHQARIRQEESDTISLDLGMGISPNAENRSNNQGRMMMRNEYGDGQTHAGNSSFKFVHTAPPPGYYGVLNNNSNPYGSRENPSDSYPCPQNMGRILMGP | 582 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa2g01023 | 582 | Gene3D | WRKY domain | 231 | 299 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
| Vifa2g01023 | 582 | Gene3D | WRKY domain | 392 | 468 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
| Vifa2g01023 | 582 | MobiDBLite | consensus disorder prediction | 462 | 539 | - | - | |
| Vifa2g01023 | 582 | MobiDBLite | consensus disorder prediction | 321 | 378 | - | - | |
| Vifa2g01023 | 582 | MobiDBLite | consensus disorder prediction | 288 | 308 | - | - | |
| Vifa2g01023 | 582 | ProSiteProfiles | WRKY domain profile. | 234 | 298 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
| Vifa2g01023 | 582 | FunFam | WRKY transcription factor | 230 | 299 | - | - | |
| Vifa2g01023 | 582 | SUPERFAMILY | WRKY DNA-binding domain | 237 | 298 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
| Vifa2g01023 | 582 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
| Vifa2g01023 | 582 | MobiDBLite | consensus disorder prediction | 364 | 378 | - | - | |
| Vifa2g01023 | 582 | ProSiteProfiles | WRKY domain profile. | 402 | 467 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
| Vifa2g01023 | 582 | MobiDBLite | consensus disorder prediction | 551 | 582 | - | - | |
| Vifa2g01023 | 582 | SMART | WRKY_cls | 407 | 466 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
| Vifa2g01023 | 582 | SMART | WRKY_cls | 239 | 297 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
| Vifa2g01023 | 582 | FunFam | WRKY transcription factor 33 | 394 | 460 | - | - | |
| Vifa2g01023 | 582 | Pfam | WRKY DNA -binding domain | 240 | 296 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
| Vifa2g01023 | 582 | Pfam | WRKY DNA -binding domain | 408 | 464 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
| Vifa2g01023 | 582 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 75 | 506 | IPR044810 | GO:0003700 | |
| Vifa2g01023 | 582 | MobiDBLite | consensus disorder prediction | 551 | 571 | - | - | |
| Vifa2g01023 | 582 | MobiDBLite | consensus disorder prediction | 14 | 29 | - | - | |
| Vifa2g01023 | 582 | SUPERFAMILY | WRKY DNA-binding domain | 399 | 467 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa2g01023 | Vifa-Chr2 | 279252858 | 279257382 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vifa2g01023 | 48 | 582 | WRKY Transcription Factor Family | AT4G26640 | 54.758 | 0.0 | 522 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | WRKY | Vifa2g01023 | WRKY | 1.4e-25 | CL0274 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa2g01023 | - | - | gmx:100781491 | 893.649 |