Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01020 ATGCCAAGTGTTACACCAAATCCATCCGACAGAGACTCGGAGCCATTTATCGAAACTGATCCGACCGGAAGATATGGAAGATACGCTGAACTCCTAGGATCAGGTGCTGTGAAAAAGGTATACAGAGCATTTGATCAAGAAGAAGGAATAGAAGTAGCTTGGAATCAAGTTAAGCTCAGAAACTTCAGTAATGACCCTGCAATGGTGGATAGGCTTTACTCTGAAGTGAGCTTGCTTAGAAGCATGACAAACAAGAACATCATTGCCCTTTATAGTGTCTGGAGAGATGAGAAACATAACACATTGAATTTCATTACTGAGGTTTGCACAAGTGGGAATTTGAGGGAGTATAGGAAGAAGCATAAACATGTTTCTGTTAAGGCTTTGAAGAAGTGGTCTAGGCAGATTTTGGAAGGGTTGAACTATTTGCATGTTCATGATCCTTGTATCATTCATAGAGACCTCAATTGCAGCAATGTTTTTGTCAATGGAAATACTGGCCAGGTTAAGATTGGAGACTTAGGATTGGCAGCAATTGTGGGAAAGACCCATTCAGCACATTCAGTATTGGGGACACCAGAGTTTATGGCACCAGAATTATACGAAGAGAATTACACAGAAATGGTAGACATATACTCATTTGGAATGTGTGTATTAGAGATGGTGACACTAGAGATTCCATATAGTGAATGTGACAATGTTGCAAAGATATACAAAAAGGTTTCTTCAGGTGTGAGGCCTCAATCCTTAAACAAGATTAAAGATGCAGAGGTTAAGGCTTTCATTGAAAACTGTCTTGCTAAACCAAGGGCTAGACCTTCTGCTCAAGAATTGCTCAAGGATCCTTTCTTTGATGTTTTAGATGATGATGAAATTGATAATGATGATTATAACTCAGTTATTTTGTGA 909 0.3905 MPSVTPNPSDRDSEPFIETDPTGRYGRYAELLGSGAVKKVYRAFDQEEGIEVAWNQVKLRNFSNDPAMVDRLYSEVSLLRSMTNKNIIALYSVWRDEKHNTLNFITEVCTSGNLREYRKKHKHVSVKALKKWSRQILEGLNYLHVHDPCIIHRDLNCSNVFVNGNTGQVKIGDLGLAAIVGKTHSAHSVLGTPEFMAPELYEENYTEMVDIYSFGMCVLEMVTLEIPYSECDNVAKIYKKVSSGVRPQSLNKIKDAEVKAFIENCLAKPRARPSAQELLKDPFFDVLDDDEIDNDDYNSVIL 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01020 302 FunFam Probable serine/threonine-protein kinase WNK1 11 107 - -
Vifa2g01020 302 Gene3D Phosphorylase Kinase; domain 1 10 107 - -
Vifa2g01020 302 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 12 285 - -
Vifa2g01020 302 CDD STKc_WNK 24 284 - -
Vifa2g01020 302 ProSiteProfiles Protein kinase domain profile. 26 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01020 302 Pfam Protein kinase domain 30 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g01020 302 MobiDBLite consensus disorder prediction 1 22 - -
Vifa2g01020 302 FunFam probable serine/threonine-protein kinase WNK9 109 290 - -
Vifa2g01020 302 SUPERFAMILY Protein kinase-like (PK-like) 21 285 IPR011009 -
Vifa2g01020 302 Gene3D Transferase(Phosphotransferase) domain 1 109 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01020 Vifa-Chr2 278455186 278456504 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01020 10 285 MAP Kinase Kinase Kinase AT5G55560 81.522 8.78e-180 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vifa2g01020 Pkinase 5.4e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01020 K08867 - gmx:100782039 523.472