Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01019 ATGGAATCGGATCTTGGCAAGCTCTTCATTGGAGGAATATCGTGGGACACGGACGAGGAACGTCTCAGGGAGTATTTTGCGACATATGGGGAGGTGATTGAGGCTGTGATCATGCGGGATCGCGCTACGGGACGTGCTCGTGGGTTTGGTTTTGTTGTCTTTGCTGATCCTTCTGTTGCTGAGAGAGTCATTGTCGATAAGCACATAATCGATGGTCGCACTGTTGAAGCAAAGAAAGCTGTTCCTAGGGATGATCAGAACAATATAAACAGACAGACTGGTAGTGTACAAGGATCGCCTGGTCCCGGTCGTACAAAGAAGATTTTTGTTGGAGGCTTACCGTCAACAATCACCGAAAGTGATTTCAAGATGTATTTTGATCAATTTGGTACGATTACCGATGTCGTTGTTATGTATGATCACAATACACAAAGGCCAAGAGGCTTTGGCTTCATCACATTTGATTCAGAAGAAGCGGTGGATAGAGTTCTTTATAAAACATTTCACGAACTCAATGGGAAGATGGTTGAAGTCAAAAGGGCGGTGCCGAAAGAACTTTCCCCGGGTCCTACCCGAAGCCCGTTGATAGGAGGATATAACTATAGTTTGAATAGTAGGGCAAGTAGCTACCTAAACAATTATGGTCAAGGTTATAGTATGAGTCCGATAGGAGGATATGGAGTCAGAATGGATAGTAGATTTAGTCCGCTTACTGGCGGTAGAACTGGTTTTACTCCTTTCGGCAGCTCTGGTTATGGAATGGGAATGAATTTGGATTCTGGATTGAGCCCAAACTTTGGAGGGAACTCTAATTTCGGGAACAATTTAGGGTACGGTCGAATATTTAGTCCTTTCTATAGTGGCAACTCAAGCAGATATGCTACTCCGATAGGCTATAATGGGGGTAACGGAAGAGGCGATTCTCTTATGAACTCGACTTCTAGGAATGTCTGGGGAAACGGGGGACTGGGCAGTGCTAATAACCCGGTTAGTCCAGGTGCGTTCTTGGGATCTGGAGGTGGGGCTTTCAGTGTTTCAATTGGAAACAGCGGCACAAACTGGGGTCCATCCATTCCAGCTCAGGGCGGAGGGTCTGCTTCTGGCTATGCTACCGGGAATAATGTTTACGAAAGCGGAGATAACAACTTCGGATTAGGTGCTGCAGGGTATGGAAGAAACAGCAATGCAGTTGTGAATCCAAACTCTACATTTAATGCATCGGCTGGTGGTTATGATGGATCGTATGGAGACTTATACCGCAGTGGCAGCGGTTCGGTTTACAATGACAATGCTTGGAGATCTGCCGCTTCAGAGATAGACGGTTCTGGCTCGTTCAGTTACGGTCTTGGTAGTATTGCATCAGACGATCCTGTGAAGACTTCTGAGGGTTATATCGGAAGCTACAATGTTGCAAGTAGACAACCTAATAGAGGAATCGCTGCTTAG 1446 0.4599 MESDLGKLFIGGISWDTDEERLREYFATYGEVIEAVIMRDRATGRARGFGFVVFADPSVAERVIVDKHIIDGRTVEAKKAVPRDDQNNINRQTGSVQGSPGPGRTKKIFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPTRSPLIGGYNYSLNSRASSYLNNYGQGYSMSPIGGYGVRMDSRFSPLTGGRTGFTPFGSSGYGMGMNLDSGLSPNFGGNSNFGNNLGYGRIFSPFYSGNSSRYATPIGYNGGNGRGDSLMNSTSRNVWGNGGLGSANNPVSPGAFLGSGGGAFSVSIGNSGTNWGPSIPAQGGGSASGYATGNNVYESGDNNFGLGAAGYGRNSNAVVNPNSTFNASAGGYDGSYGDLYRSGSGSVYNDNAWRSAASEIDGSGSFSYGLGSIASDDPVKTSEGYIGSYNVASRQPNRGIAA 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01019 481 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Vifa2g01019 481 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Vifa2g01019 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Vifa2g01019 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Vifa2g01019 481 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Vifa2g01019 481 Gene3D - 103 189 IPR012677 -
Vifa2g01019 481 SUPERFAMILY RNA-binding domain, RBD 4 104 IPR035979 GO:0003676
Vifa2g01019 481 SMART rrm1_1 7 78 IPR000504 GO:0003723
Vifa2g01019 481 SMART rrm1_1 107 179 IPR000504 GO:0003723
Vifa2g01019 481 MobiDBLite consensus disorder prediction 80 105 - -
Vifa2g01019 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Vifa2g01019 481 MobiDBLite consensus disorder prediction 86 100 - -
Vifa2g01019 481 CDD RRM2_Hrp1p 107 184 - -
Vifa2g01019 481 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 477 - -
Vifa2g01019 481 Gene3D - 6 88 IPR012677 -
Vifa2g01019 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Vifa2g01019 481 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01019 Vifa-Chr2 277959956 277962064 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01019 2 185 Eukaryotic Initiation Factors Gene Family AT2G36660 28.796 4.49e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01019 K14411 - gmx:100794390 833.558
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01019 2 277959956 277962064 Vifa2g01019 2 277959956 277962064 ECH