Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01014 ATGGCGGAAATCGCTGTGTCATTAGTTATTGACCAACTTCTTCCACTCTTAAAGGAAGAAGCCAAGTTGTTGAGAGGTATTGACAAGGAGTTTGCAGACATTAAAGATGAACTTGAATGTATTCAAGCGTTTCTTAAGGATGCTGATAAAAGAGTTTCAACAATTGAAGGAGTCAAAACATGGGTGAAGCAAGTTAGGGAAGCAGCTTTTCGCATTGAAGATATCATTGATGATTATATGATCCTGGTGGGACAGCAGCCTCTACATCCTGGCTTTCTATCTTTACTCCATAAGGTCAAAACTGTTATCCCTCGTCGTCGAATAGCGTCCGAGATTCAAGACATTAAGTCAGATGTACGAGGGATCAAGGAAAGAAGTGAAAGATATGGCTTCCAAAGTTCTCTTGAACAAGGACCAAGCAATTCCAAATGGCATGACCCCCGATTGGCTGCTCTTTACATCGAAGAATCTGAATTTGTGGGCTTTAAAGAGCCAAGGAAAAGATTGATTGATTGGATGGTAAAGGGAAGGGACGAGCGCACTGTAATTTCTGTTGTAGGAATGGGAGGGCAAGGAAAAACCACTCTTGCCAAGAAAGTTTTTGACAGCAAGGATGTAGTCCGCCACTTTGATATTCATGTTTGGATCACAGTATCTCAATCATATAACGTTGAAGACTTGCTGAGGGAGATGCTGATAAAGTTTTGCAAACAAAAAGGAGACATTGCTCCGAGGGATATTTCTCAAATGGATCGAGGGTCATTGACCAAAGAAGTGCGAAACTACTTGCAGCAAAAGAGGTATATTGTCATGTTTGATGATGTTTGGGATGTACATTTTTGGGATGCTATTAAATTTGCTGTAATTGATAATAAAAATGGAAGTAGGATATTTATCACAACAAGAAACCTAGAAGTTGTGATGTCTTGTAAAGAATCTTCTTTTGTTGAATTGCTTGAGTTGCAGCCTTTAACTCAAGAACAATCTTTGGAGTTGTTCAATAAGAAGGCATTCCAATTTGACTATGGTGGGTGTTGTCCAAAGGAGCTGAATGATATAGCTTGTGAAATTGTTAGAAAATGCAAAGGATTACCACTAGCAATTGTTGCCATTGGTGGTGTTTTGTCTGCAAAAGATAAAAATGTTTTTGAGTGGCAGAAATTTAATGAAAATCTGAGCTTAGAGCTTTTGAAAAGTACACATTTAATTGGGATACAAGAAATTTTAGGCTTAAGTTATGATGATTTGCCTTACCATCTCAAGCCATGCTTGTTGTATTTTGGAATATTTCCTGAAGATCATATTGTTAGATCAAAGAAAGTGATTCGACAATGGATAGCTGAAGGGTTTGTGAAGGAGGAAAATGGGAAGACTTTGGAAGAAGTTGCAGAAGGATATTTAATAGAGTTGATCCATAGAAGCTTGGTGCAAGTATCCTTGCTTCGAATTGATGGTAAGGTTAAACGTTGTCGTGTTCATGATCTAATACGCGAGATGATCCTTGAAAAAAATGAGGATTTAAATTTTTGCAAGCATATTATTAGTGATGCTGGACAGTCATCCTTGAGTGGAAAATTTCGGCGCTTATCAATAGCAACCACTTATGATTTTTTTCCGCATATTGAAGGCTTCCCTGTCCGGTCTCTATTTTTTTTTGAAAATGGAGAACCATATAAACATTGTAAGAGGAGAATCCCTTCACCTACCACATACAGGCATCAACACAAAATCCTAAAATCAATTGGCATGCTCCAGAACCTAGAGACTTTGGAGGTAAAGGGTGCCATCCGTGAGTTGCCAAAGGAGATTAGCAAGCTCAGAAAGTTAAGACATCTTAGTAAATCTGAACTGTCTTTGATCCAATTAAAGGATGGTATTGGCAAGATGACGTCCCTACAAACACTTCGATATGTTGATTTAGGTATGGATGGAGTAGCAGAGGTAATTAAAGAGTTAGGGAAGTTGAAGCAGCTAAGGGATTTGGGTTTGGTTAATGTTCGCACACAGGATGGAAGCATTTTGTCCTCCTCAATCAATGAAATGTGTTACTTGGAGAAACTATATGTTTCATCAAGTATGACCGGTAATGGCTATGATGTCATTGATTTACATCTGATTTCAACGCCAACTATGCTTCGCAAACTTACACTGAGTGGGAGGCTACAGAAGTTGCCAGAGTGGATTTTAAAGCTTCAAAATCTTGTTCAATTGAAGTTGATGCACTCCTATTTCACTATAGATCCAATTAAATCCCTAAAAAGTTTGCAAAACTTGTTGATGCTCTCTATATGCTTTACACCGTGTTTCGAGGAGTTAGAGTTGCATTTTGAAGATGGATGGTTTCAGAAACTAAAGGAACTGCATGTTGGATATGTGGATGCAATGAGAGATATTATCATCGACAAAGGAGCACTGCCTTCTCTTACAAAGCTTGAGTTAATAGTACAGTGCGAACTGAAGAGTATACCTACTGGCATCGAGCACTTGGAGAAGCTAGAGGTTCTCTATATTCAAACCGTTATCATCCTAAGTGGTAATAAAGGTGTTGAGCTTCAAGTGCAACTCAGATTCTCCACATGGAATTTTACTACAGCACTTTGGGACTTTAATAATGGTGTATGA 2622 0.3848 MAEIAVSLVIDQLLPLLKEEAKLLRGIDKEFADIKDELECIQAFLKDADKRVSTIEGVKTWVKQVREAAFRIEDIIDDYMILVGQQPLHPGFLSLLHKVKTVIPRRRIASEIQDIKSDVRGIKERSERYGFQSSLEQGPSNSKWHDPRLAALYIEESEFVGFKEPRKRLIDWMVKGRDERTVISVVGMGGQGKTTLAKKVFDSKDVVRHFDIHVWITVSQSYNVEDLLREMLIKFCKQKGDIAPRDISQMDRGSLTKEVRNYLQQKRYIVMFDDVWDVHFWDAIKFAVIDNKNGSRIFITTRNLEVVMSCKESSFVELLELQPLTQEQSLELFNKKAFQFDYGGCCPKELNDIACEIVRKCKGLPLAIVAIGGVLSAKDKNVFEWQKFNENLSLELLKSTHLIGIQEILGLSYDDLPYHLKPCLLYFGIFPEDHIVRSKKVIRQWIAEGFVKEENGKTLEEVAEGYLIELIHRSLVQVSLLRIDGKVKRCRVHDLIREMILEKNEDLNFCKHIISDAGQSSLSGKFRRLSIATTYDFFPHIEGFPVRSLFFFENGEPYKHCKRRIPSPTTYRHQHKILKSIGMLQNLETLEVKGAIRELPKEISKLRKLRHLSKSELSLIQLKDGIGKMTSLQTLRYVDLGMDGVAEVIKELGKLKQLRDLGLVNVRTQDGSILSSSINEMCYLEKLYVSSSMTGNGYDVIDLHLISTPTMLRKLTLSGRLQKLPEWILKLQNLVQLKLMHSYFTIDPIKSLKSLQNLLMLSICFTPCFEELELHFEDGWFQKLKELHVGYVDAMRDIIIDKGALPSLTKLELIVQCELKSIPTGIEHLEKLEVLYIQTVIILSGNKGVELQVQLRFSTWNFTTALWDFNNGV 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01014 873 Pfam Rx N-terminal domain 5 88 IPR041118 -
Vifa2g01014 873 FunFam Probable disease resistance protein At1g61300 145 314 - -
Vifa2g01014 873 Gene3D - 323 417 IPR042197 -
Vifa2g01014 873 Gene3D - 419 504 IPR036388 -
Vifa2g01014 873 PRINTS Disease resistance protein signature 262 276 - -
Vifa2g01014 873 PRINTS Disease resistance protein signature 182 197 - -
Vifa2g01014 873 PRINTS Disease resistance protein signature 361 375 - -
Vifa2g01014 873 CDD RX-CC_like 2 124 IPR038005 -
Vifa2g01014 873 FunFam Probable disease resistance protein At1g63360 413 502 - -
Vifa2g01014 873 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 140 427 IPR027417 -
Vifa2g01014 873 SUPERFAMILY L domain-like 513 844 - -
Vifa2g01014 873 Gene3D - 148 317 IPR027417 -
Vifa2g01014 873 Gene3D Ribonuclease Inhibitor 569 865 IPR032675 -
Vifa2g01014 873 Gene3D - 4 113 - -
Vifa2g01014 873 Pfam NB-ARC domain 167 415 IPR002182 GO:0043531
Vifa2g01014 873 PANTHER DISEASE RESISTANCE PROTEIN RP 33 813 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01014 Vifa-Chr2 276347463 276350463 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01014 183 380 WRKY Transcription Factor Family AT5G45050 27.941 1.07e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01014 K13457 - gmx:100819372 832.402