Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01004 ATGGCCATGATGATGAACATGATGGTTGCAGTTAATTTTACATCTGATATGGAAAGAAATCTGGCTCATGATCACGCACAGGTTGTTCCTATCACACTCGTTGTCGCTGTTCTATGCCTTTGCTTGCTCATTGGTCACTTGCTTGAAGAAAGTCGATGGATTAATGAATCCATTGTCGCCATTTTTGTTGGATGCATTACTGGATTGGTTATCTTGTTATTAACTAAGGGAAAAAGTTCTCGGATCCTTACATTTAATGAAGAAGTATTCTTCATATACCTCCTCCCCCCTATAATATTCAATGCAGGGTTTCAGGTGAAGAAGAAACAGTTCTTCCACAACTTTTTAACCATCATGCTGTTTGGAGTGATAGGGGTTTTCATTTCAACGTCTATTATTACCGGTGGCAGCTGGTGGCTGTTTCCCAAGTTGGGCTTCCCTTACCTTACAGCGCGAGATTATCTCGCTTTAGGAGTAATTTTCTCGTCAACCGACACAGTATGTACACTACAGGTTCTTAATCAAGAAGCTACTCCTTTACTATACAGCTTAGTCTTTGGGGAAGGAGTGGTAAATGATGCAACATCAGTTGTACTCTTCAATGCAGTCCAGAAGCTTGATGTTTCAAGACTTAATGGCAAGGCACTCCGTGTTATTGGTGATTTCTTGTATCTATTCGCAGCAAGTACCGCACTTGGAGTCATAGCTGGACTTGTCACAGCATATATCTTGAAAGCGTTAACCTTTGGAAGACATTCAAGTGTTCGTGAAATTTCAATGATGATGTTAATGGCATATCTATCCTACATGTTAGCAGAGCTTCTTGAACTAAGTGGAATCCTCACTGTTTTCTTTTGCGGAATAACAATGTCACATTATGCATGGCATAATGTGACTGAAATTTCAAGAACCACAACCAGGCATGTGTTTGCAACAATGTCGTTTATCGCAGAAACTTTCATATTTCTTTATGTCGGTATGGATGCCCTTGACATTGAAAAGTGGAGGATGACCCATTTAAGATTTGGAAAATTGTTGGGAATTTACAGTTGCTTAATTTTCTTAATATTGCTTGGGAGGGCTGCATTTGTTTTCCCGCTCTCCACACTTGTCAATTATATGAATAGGCGCGTCGAAGAAACACCAAGTATCACATTACAACACCAGATAATCATCTGGTGGGCTGGAGTAATGAGGGGAGCAGTCTCCATTGCTTTGGCCTTCAAACAGTTCACATTCTCTGGGGTTACTTCAGATCCAGTTAAAGCGACAATGATTACCAACACCATTATTGTTGTCCTTTTCACCACACTGGTGTTTGGTTGCGTCACAAAACCACTTGTTAGATATCTTCTTCCCCACCACCACGCAAGAAGGGTAGACAAGAGCCATGAAGGGTCGAGCTCACCCGTTGCGGACTTGAATCTACCTTTACTATCCTTTGACGAGTCAGCAGAAACTAACCTTAGCCGTGCAAAGGAAAGCCTATCCATGTTAATAGAAAGTCCTGTATACACTATACATTACTATTGGAGGAAGTTTGATGATGCACACATGAGACCTATATTTGGAGGACCTTGCTCTAACCCTAACCCTTCAGAGTGCTAG 1608 0.4123 MAMMMNMMVAVNFTSDMERNLAHDHAQVVPITLVVAVLCLCLLIGHLLEESRWINESIVAIFVGCITGLVILLLTKGKSSRILTFNEEVFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMLFGVIGVFISTSIITGGSWWLFPKLGFPYLTARDYLALGVIFSSTDTVCTLQVLNQEATPLLYSLVFGEGVVNDATSVVLFNAVQKLDVSRLNGKALRVIGDFLYLFAASTALGVIAGLVTAYILKALTFGRHSSVREISMMMLMAYLSYMLAELLELSGILTVFFCGITMSHYAWHNVTEISRTTTRHVFATMSFIAETFIFLYVGMDALDIEKWRMTHLRFGKLLGIYSCLIFLILLGRAAFVFPLSTLVNYMNRRVEETPSITLQHQIIIWWAGVMRGAVSIALAFKQFTFSGVTSDPVKATMITNTIIVVLFTTLVFGCVTKPLVRYLLPHHHARRVDKSHEGSSSPVADLNLPLLSFDESAETNLSRAKESLSMLIESPVYTIHYYWRKFDDAHMRPIFGGPCSNPNPSEC 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01004 535 PRINTS Na+/H+ exchanger signature 89 100 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vifa2g01004 535 PRINTS Na+/H+ exchanger signature 103 117 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vifa2g01004 535 PRINTS Na+/H+ exchanger signature 158 168 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vifa2g01004 535 PRINTS Na+/H+ exchanger signature 118 126 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vifa2g01004 535 NCBIfam sodium/hydrogen exchanger 3 30 465 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vifa2g01004 535 Gene3D - 150 202 - -
Vifa2g01004 535 PANTHER SODIUM/HYDROGEN EXCHANGER 24 530 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Vifa2g01004 535 Pfam Sodium/hydrogen exchanger family 32 449 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01004 Vifa-Chr2 273869032 273872693 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01004 9 535 Antiporters AT5G55470 68.797 0.0 749
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01004 - - gmx:100813332 796.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01004 2 273869032 273872693 Vifa2g01004 2 273869032 273872693 ECH