Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00990 ATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCAATGAAACTTGCCGATGATATCAGTGGCATGATTTCTGAACATAATTCATTTCCTTCATCTGGACCAGAAACACAGCGTCATGCATCTGCTATAAGAAGGAAGATAACAATATTGGGGACCAGACTGGATAGCTTGCAATCCCTTTTGTCAAGGGTCCCTGCAAAGTCTGAGAAGGAAATGAATCGTCGCAAGGACAACCTTGCAAACTTGAGGTCAAAGGTTAATCAAATGGCTTCAACGTTGAACATGTCAAACTTTGCAAATAGGGATAGTTTGCTTGGTCCAGAAATAAAACCAGATGCAATGAGCAGAACCGTTGGCTTGGATAACAATAAACTTGTTGGTCTGCAACGGCAAGTTATGAAAGAGCAAGATGAGGGCCTTGAGAAATTGGAGGAAACTGTATTAAGTACGAAACATATTGCGTTGGCAGTGAATGAAGAGCTGACTCTGCACACTAGACTCATTGATGACTTGGACGAACATGTAGATGTCACGGATTCTCGGCTGAGGAGAGTGCAGAAGAACTTGGCAATTTTAAACAAACGCACTAAGGGTGGTTGCTCATGCTTGTGCATGCTATTATCTGTGATTGGTATAGTGGTCTTGGTTGTTATCATATGGCTTCTGGTCAAATATTTGTAG 690 0.4159 MASSSDSWMKEYNEAMKLADDISGMISEHNSFPSSGPETQRHASAIRRKITILGTRLDSLQSLLSRVPAKSEKEMNRRKDNLANLRSKVNQMASTLNMSNFANRDSLLGPEIKPDAMSRTVGLDNNKLVGLQRQVMKEQDEGLEKLEETVLSTKHIALAVNEELTLHTRLIDDLDEHVDVTDSRLRRVQKNLAILNKRTKGGCSCLCMLLSVIGIVVLVVIIWLLVKYL 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00990 229 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 133 195 IPR000727 -
Vifa2g00990 229 SMART tSNARE_6 128 195 IPR000727 -
Vifa2g00990 229 Pfam SNARE domain 170 221 IPR000727 -
Vifa2g00990 229 Gene3D - 134 197 - -
Vifa2g00990 229 CDD SNARE_Qc 136 193 - -
Vifa2g00990 229 FunFam syntaxin-51 isoform X2 135 197 - -
Vifa2g00990 229 SUPERFAMILY SNARE fusion complex 125 194 - -
Vifa2g00990 229 PANTHER SYNTAXIN 37 216 IPR045242 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00990 1 229 SNARE and Associated Proteins AT1G79590 73.391 7.23e-122 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00990 K08503 - gmx:100794038 375.17