Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00973 ATGGGTAGCGAAGAAGAGAGGGTTCTTGAGAACCAGCTAGAACTTCAATTGCACGAGCAAAGGGATTCTCTCACCGCTATCGATCACGCTCTTCTCCTTGATCCAACCAATTCCGAACTCCTCGAGGTTCACGAGGAGCTTGTTCAGGCAATTAAGGATGCAGAAGAAGGACTTCTTCATCTGAAGCGATCAAGATTATTATCTGAAGCAGACGCATTGCCGCATAGTACTAATATTTTTGCGGAAGAAGAGAAAGTAGAGCCACTTGATCCTGCTGATGTTGAATCAGAGCCACTAGGAGAAAAATGCTTTTCTGTTGGATCTAAATGTAGATTTCGTTACAAAGATGGACGTTGGTACCATGGTCAAGTGCTGCAGTTGGATAATTCAGTGGCCAAGATTTCATTTCTTACTCCTACATCTGACAATATGCTGATGTGCAAGTTCTTTTTACAACAACGATGTCGATTTGGTAGTAACTGTCGCCTATCCCATGGAATTAATGTTCAACTGTCCTCCCTTAAAGAATATGTCCCGACAATCTGGAAACTGTCCCATGTGGGGTCAAGTATATGGGCAGTCTCAAATACAAATGCAGGCATTTGGAGAGAAGCTGAGCTTGAATCATGGGATGAAAAAGCCGGAGTTGGACAAGTTGTTTTTCGAGACGATGGAAGTTCTGTGAAGCTTGGTCCACAAGATATGGTATTAACTGAGTATGCAGATGTGAGTGACATAGATAGTGATTTCAGCTCAGAACAATCCGATTACAGTGGCTCCGATGAAGAGGAACCACAAGGTTTAGGATTTATGGATAGTACCAACTTGCAGAAAGGCGTTCAAACCGAAACTGCTATATTTGCAAAGTGGGAGAATCATACCAGAGGCATAGCTTCCAAAATGATGGCGAATATGGGTTACCGAGAAGGAATGGGCTTAGGTTTAACTGGTCAGGGTATGGTTGATCCCATACCAGTTAAGGTCCTACCACCAAAGCAGTCATTAGATCATGCACTCAAGTCTCATAATGTAGAAGGGAACACAGAGAAGCAAAGGAAGAAACGGACCAGAGGTGGTAGAAGAAAACGTGAGAAGAAATTTGCAGAAGCAATTCGTGCCGCAAAAGAAAAAGAAGAACCGGCACCAGATGTCTTTGCGCTAATAAATACTCAGCTAGCTATGCACGGTGAAGCTTCCAATGTTGGTGGATCAATGAAGAAGCAGCAAAGTAAAAGTTCAGGGGAAGTTAAAAAGGTCGATAGGAGGGTGTTGGTTGCTTATGAGAATGATGTGAAGGATCTGAAAGTGCAGGTTCAAAAGTTCGAACAAATGGCTGAAGCAAACAAAAAAGAAAAGCCTGTTTTTGATGCTGCTATGAAAAAATTAGTTCAAACTCGCAAGGCGTTGGCCGAGGCTGAAGCAGTTCACGCCTCTGCCTCAAATGATGTTGTTAGCAAAGAAAAAGAGAAGAGATGGCTTAAGTTTTAG 1488 0.4281 MGSEEERVLENQLELQLHEQRDSLTAIDHALLLDPTNSELLEVHEELVQAIKDAEEGLLHLKRSRLLSEADALPHSTNIFAEEEKVEPLDPADVESEPLGEKCFSVGSKCRFRYKDGRWYHGQVLQLDNSVAKISFLTPTSDNMLMCKFFLQQRCRFGSNCRLSHGINVQLSSLKEYVPTIWKLSHVGSSIWAVSNTNAGIWREAELESWDEKAGVGQVVFRDDGSSVKLGPQDMVLTEYADVSDIDSDFSSEQSDYSGSDEEEPQGLGFMDSTNLQKGVQTETAIFAKWENHTRGIASKMMANMGYREGMGLGLTGQGMVDPIPVKVLPPKQSLDHALKSHNVEGNTEKQRKKRTRGGRRKREKKFAEAIRAAKEKEEPAPDVFALINTQLAMHGEASNVGGSMKKQQSKSSGEVKKVDRRVLVAYENDVKDLKVQVQKFEQMAEANKKEKPVFDAAMKKLVQTRKALAEAEAVHASASNDVVSKEKEKRWLKF 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00973 495 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 1 495 - -
Vifa2g00973 495 SUPERFAMILY CCCH zinc finger 142 166 IPR036855 GO:0046872
Vifa2g00973 495 Gene3D - 126 178 - -
Vifa2g00973 495 Pfam G-patch domain 294 336 IPR000467 GO:0003676
Vifa2g00973 495 Pfam CCCH-type zinc finger 146 166 IPR041367 -
Vifa2g00973 495 MobiDBLite consensus disorder prediction 339 367 - -
Vifa2g00973 495 MobiDBLite consensus disorder prediction 248 274 - -
Vifa2g00973 495 Coils Coil 469 489 - -
Vifa2g00973 495 Coils Coil 424 451 - -
Vifa2g00973 495 SMART c3hfinal6 141 167 IPR000571 GO:0046872
Vifa2g00973 495 ProSiteProfiles G-patch domain profile. 294 340 IPR000467 GO:0003676
Vifa2g00973 495 ProSiteProfiles Zinc finger C3H1-type profile. 141 168 IPR000571 GO:0046872
Vifa2g00973 495 SMART G-patch_5 292 338 IPR000467 GO:0003676
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa2g00973 G-patch 2.2e-12 CL0449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00973 - - psat:127084863 794.267