Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00971 ATGGGTCGAGGAGGTGCAACAACCGCTGCGGCGGCGGTTGAACCGGTTTTTTTCAAAGAACCGAGATACAGAGGAGTTAGAAAAAGACCGTGGGGACGGTTCGCGGCTGAGATCAGAGATCCTTTGAAGAAAGCAAGGGTTTGGCTTGGAACTTTTGATACGGCTGAAGAGGCGGCGCGTGCGTACGACACCGCCGCTAGAAATCTCCGTGGACCGAAAGCGAAGACAAATTTTCCTCTAGCACAGCCTTTTTATCAGAACCCTGAAACCGGAAATCCGTTTGGGGAGCTTAGATTCTACGCCGGTGCCGGTGCTGGTGCTGGAGATGGTTTTCAGGATCATCGGAGACCTACATCAAGTGGTATGAGCAGCACGGTTGAATCCTTCAGCGGTCCACGTCCGGTGAGACCACCGATGCCGCCGTCTGTTGTTACCGGAAGACGATACCCGAGAACCCCACCGGTTGCTCCTGAAGACTGCCGTAGTGACTGTGACTCTTCATCTTCCGTTGTCGATGATGCCGACAACGACAACGCGGCATCATCCACGATGCTTTCGTTTAAACGCCAGCCGCTGCCGTTTGATCTGAACGCGCCTCCGCTGGAGGACGCTGATGCTGACGTGGCCATCGGACTTGGTGAGGATCTGCACTGCACTCTTCTCTGCCTCTAA 672 0.5476 MGRGGATTAAAAVEPVFFKEPRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDTAEEAARAYDTAARNLRGPKAKTNFPLAQPFYQNPETGNPFGELRFYAGAGAGAGDGFQDHRRPTSSGMSSTVESFSGPRPVRPPMPPSVVTGRRYPRTPPVAPEDCRSDCDSSSSVVDDADNDNAASSTMLSFKRQPLPFDLNAPPLEDADADVAIGLGEDLHCTLLCL 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00971 223 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
Vifa2g00971 223 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Vifa2g00971 223 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Vifa2g00971 223 MobiDBLite consensus disorder prediction 116 130 - -
Vifa2g00971 223 FunFam Ethylene-responsive transcription factor 2 22 80 - -
Vifa2g00971 223 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 22 182 - -
Vifa2g00971 223 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Vifa2g00971 223 Pfam AP2 domain 21 71 IPR001471 GO:0003700|GO:0006355
Vifa2g00971 223 MobiDBLite consensus disorder prediction 162 177 - -
Vifa2g00971 223 CDD AP2 21 79 IPR001471 GO:0003700|GO:0006355
Vifa2g00971 223 MobiDBLite consensus disorder prediction 108 177 - -
Vifa2g00971 223 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Vifa2g00971 223 Gene3D AP2/ERF domain 22 81 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00971 Vifa-Chr2 260358739 260359410 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00971 1 223 AP2-EREBP Transcription Factor Family AT3G20310 51.587 2.40e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa2g00971 AP2 1.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00971 K09286 - gmx:100782025 259.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g00971 2 260358739 260359410 Vifa2g00971 2 260358739 260359410 ECH