LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa2g00968	ATGGCTTTTCCTCCTTATCGTCGATCTCACTTCCGTAGCAAAACTTATTGCTCCCTTGTCCGCATTTTCTCTCATCTTTCTCCTTCCACCGTTCCAACTCAATCCGATAATGGCAATGTTGGAACGGGACGAGAAAGCCAGGGACAGGAGCCGGTTGGTTCTATACCCTTGAAGGAGATATGTGATGTTCATGAGAGCGTCGGAGACAGGAGCAAGGCTTTTAGTGTCAATGAAATTGTCCTTGACGATGAAGACTCTCTGATGGGAATAGATGAACCATCCTCACTAACAAATGGTTTTCATTTGGAACAAATAATGGATGAATTGGAGCTTGTTGTGAAAGGGACTGAAGATCCTGTTTGCAATGATGGTTTAATCCCTTTGAACTGCGAGAAACAGAATAGTGGTAGTGAAGTTGATTTAATGGATTACCGAGTGGAGCATGTTGAATTTCTGCATTGTGGTACAAACACGTCTGGTGTTGTAAGTGGGCTACAATCTCAGGTACCTGTGGAGCTTAATCAAGTTGATTCAGAAGTCTTTCATGTGTTGGAGTCAACAAATGGACAAGCTTCTGATTCTGTAATCAGTACAGTAAGTATAAATCATGATAGTCAACAAAAGGAAACAGAATTGGTGAAACCGGTTTCTCCTATAGCGGGATTGCTTCCTACAATACAAGAGGGTGAATTTGAGAAGGAAGAAGAGTATGGTCATCAGGTTGATGAAGTAGCTCATAGTTCTTTAGATCACGATAAGACTATTGAAACATTGAATATGACAGAAGAAGATGTTGGATTACTGGATTCAACAATTATGGAAGATAAAAACAAAACACAAAATAAAGAGAAATTAGAGAAGTTAATTTGTGTAACAGATGCTACAATTTCTTCCGATCTTCTGATTGAAGAAGATCTAGAAGAGGGGGAAATTTCTGGAGAGTTTGTAATGGTGGATGAAAACACATTTGACGTGTCTTCCGCGGATGCTACAATTTCAGAACAGATGAAAATGGATGAGATTCAGAAACCCGGGAATTCATTTGGAAACAAGGCATCCCCCTTCAATATGGGTAACAATGGGCTTGTAGAACCTAGGACTATCAATGCTATACCAACATATTTAACCCCAAAGCAAGTCTTGCACAAAGGATTCATGGAAGAAACCGCTATCAAAGATCTTGGTAACTCGTCTGCTGTACAGGAGGTAATTGATCCCGGTAGAAAGCGAAAATATGTTCCTGATTCGGAGGAGGAGGAAGATAGAAAAAAGGAGATGGTTGATGCCAGTAAAAGTAAACGTGGTCCTGGTTCTCAAGAGAAAAAATATAAAAAGAGGAAGAAGTATCGAAAGAACCGAGCAGAAAAGAACAGAGAACTAGGTGTTAAAAGGTTGAAGTTGATTCCAGTACAGAAACCAAAAACCATCACATATTGTCGCCATTATATGAAAGGAAGGTGCAACGAGGGTGACAAGTGCAAATTCTCTCATGATACTGTTCCTGAAACAAAGTCCAAGGCATGTGTTCACTTTGCTCGTCACTCTTGTATGAAAGGGGATGATTGCCCATTTGATCACCAACTCTCCAAGTATCCTTGTTCTAATATTGTTTCTAATGGCTCTTGTACTAGAGGTGATGCTTGTTTGTTTTCACACCAGGTACCAACCAACCAATGTATACCTACGCCTACAAATGGTTCTAAACCAGAGTCAAAGTCTCCTCTTCCGTCAGGAAATACAAATTTCAGTACGCCACTGAATAATCATGGCACTAATTCTGTCCAACAAAACCACTTCACCAATTCTAAGGGAACAGAAACTTCGCAGACAAAGCCTACCTCAGCACCCAAAGGAATCAGATTCATAAATGTTGGTAACTTATCATCTAGTGCGCCAAAACAAGACACGATAACACCAAACAAAGGAAGTCTTGTCCACAATGGGACATGTGCGGATAAAGGTTCTGTTTCCAGCTTTAAAAGTCCTATTCAATCCACTGCAGAAAGAATGATATTGAATTTGCCTCAGTCAGTCAATTTTGGTTTGTCTGAACATTCAATTTCATCTCCGAATAAGGATGGTCATGGAAAAGCTAGAGACAGAACTGCACAAAACTTACCACAAACTGTGCTATTCTCACATAATGAAATTTCAGACAAAAATCAATCTATAGTAGAACGAATAAAATCGAAGTTTCTAGAGAAAGATTCAACCAATGTTCAAGCGGTAAAAAAGGCGTCTGACAATTCTCAGACTTCAAATGTGACCTCAGCCACACTTCTTGCCCGTCCGTTTGTTTCACATCAGTCTTCAGGAAGCCTAGTATCTGGATATCATAAACAAGCATCAAACTTAGGCCAAAGGGCACTTTTATCAACTTTAGCTTTTGCAGCAGAGCACGAATCAGATATTAAAATGAAACGCCCCACTGTTGATTCACCTGTATGA	2448	0.3995	MAFPPYRRSHFRSKTYCSLVRIFSHLSPSTVPTQSDNGNVGTGRESQGQEPVGSIPLKEICDVHESVGDRSKAFSVNEIVLDDEDSLMGIDEPSSLTNGFHLEQIMDELELVVKGTEDPVCNDGLIPLNCEKQNSGSEVDLMDYRVEHVEFLHCGTNTSGVVSGLQSQVPVELNQVDSEVFHVLESTNGQASDSVISTVSINHDSQQKETELVKPVSPIAGLLPTIQEGEFEKEEEYGHQVDEVAHSSLDHDKTIETLNMTEEDVGLLDSTIMEDKNKTQNKEKLEKLICVTDATISSDLLIEEDLEEGEISGEFVMVDENTFDVSSADATISEQMKMDEIQKPGNSFGNKASPFNMGNNGLVEPRTINAIPTYLTPKQVLHKGFMEETAIKDLGNSSAVQEVIDPGRKRKYVPDSEEEEDRKKEMVDASKSKRGPGSQEKKYKKRKKYRKNRAEKNRELGVKRLKLIPVQKPKTITYCRHYMKGRCNEGDKCKFSHDTVPETKSKACVHFARHSCMKGDDCPFDHQLSKYPCSNIVSNGSCTRGDACLFSHQVPTNQCIPTPTNGSKPESKSPLPSGNTNFSTPLNNHGTNSVQQNHFTNSKGTETSQTKPTSAPKGIRFINVGNLSSSAPKQDTITPNKGSLVHNGTCADKGSVSSFKSPIQSTAERMILNLPQSVNFGLSEHSISSPNKDGHGKARDRTAQNLPQTVLFSHNEISDKNQSIVERIKSKFLEKDSTNVQAVKKASDNSQTSNVTSATLLARPFVSHQSSGSLVSGYHKQASNLGQRALLSTLAFAAEHESDIKMKRPTVDSPV	815

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa2g00968	815	MobiDBLite	consensus disorder prediction	405	437	-	-
	Vifa2g00968	815	ProSiteProfiles	Zinc finger C3H1-type profile.	532	555	IPR000571	GO:0046872
	Vifa2g00968	815	MobiDBLite	consensus disorder prediction	560	618	-	-
	Vifa2g00968	815	ProSiteProfiles	Zinc finger C3H1-type profile.	502	529	IPR000571	GO:0046872
	Vifa2g00968	815	MobiDBLite	consensus disorder prediction	438	453	-	-
	Vifa2g00968	815	Gene3D	-	438	503	-	-
	Vifa2g00968	815	MobiDBLite	consensus disorder prediction	30	49	-	-
	Vifa2g00968	815	MobiDBLite	consensus disorder prediction	560	616	-	-
	Vifa2g00968	815	SUPERFAMILY	CCCH zinc finger	473	498	IPR036855	GO:0046872
	Vifa2g00968	815	Gene3D	-	504	567	-	-
	Vifa2g00968	815	ProSiteProfiles	Zinc finger C3H1-type profile.	473	500	IPR000571	GO:0046872
	Vifa2g00968	815	MobiDBLite	consensus disorder prediction	30	53	-	-
	Vifa2g00968	815	MobiDBLite	consensus disorder prediction	405	458	-	-
	Vifa2g00968	815	SMART	c3hfinal6	530	554	IPR000571	GO:0046872
	Vifa2g00968	815	SMART	c3hfinal6	474	499	IPR000571	GO:0046872
	Vifa2g00968	815	SMART	c3hfinal6	502	528	IPR000571	GO:0046872
	Vifa2g00968	815	PANTHER	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI	274	808	IPR045124	GO:0003723\|GO:0045892
	Vifa2g00968	815	Pfam	CCCH-type zinc finger	479	498	IPR041367	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa2g00968	Vifa-Chr2	257882161	257887107	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Vifa2g00968		zf-CCCH_4	1.9e-07	CL0537

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa2g00968	-		-	tpra:123918975	1036.94