Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00963 ATGTCGAGTTTGCCCCATTATCTGTCTATGAACTCTGCTTTCGGTGTTGGTGCTACTGCTATTTCTCATTCTTCCATTGCTAACTCTCAATCTAGCGCCGGTAACAGGGATCGGAACATGGCTTCTTCTGACCAACTCGTTCTCGAACTCAGTAACCCAGAGCTTCGTGAAAATGCTCTTCTCGAACTCTCTAAGAAGAGAGAGCAATTTCAAGATCTTGCTCCCTTGTTATGGAATTCATTTGGTACTATTGCAGCTCTTTTGCAGGAAATAGTGTCGATATACCCAGTGCTATCACCACCCAATCTCACTCCTTCACAATCAAATCGAGTATGCAATGCTCTCGCTCTTCTTCAGTGCGTAGCATCTCACCCCGATACAAGGATGCTATTCCTCAACGCTCATATTCCATTGTATCTGTATCCCTTCTTGAACACCACAAGTAAGTCAAGACCTTTTGAGTACTTGAGGCTTACTAGTCTTGGTGTCATTGGCGCATTAGTGAAGGTTGATGATACTGAAGTTATTAGCTTTCTGCTTTCTACTGAAATAATTCCTCTGTGCCTTCGCACAATGGAAATGGGGAGTGAGCTCTCCAAAACAGTCGCAACATTTATTGTTCAAAAGATTCTGTTGGATGACGTCGGTTTGGACTATATCTGTACTACTGCTGAGCGTTTTTTTGCAGTAGGCCGAGTTCTTGGAAATATGGTGGCAGCTCTTGCTGAGCAACCATCATCTCGTCTGTTGAAGCATATCATTCGATGCTATCTTCGTCTGTCAGATAACCCAAGGGCTTGTGATGCATTAAGAAGCTGTCTTCCAGACATGTTAAGAGACGCCACTTTCAGCAGCTGCCTTCGTGAGGACCCTACAACTAGGAAGTGGCTGCAACAATTGCTGCATAATGTTGGAGGGAATCGGGTTCCCGCACTGCAAGGTGGAGGAGGTTTTGATCATTTAATGGTGAATTGA 975 0.4441 MSSLPHYLSMNSAFGVGATAISHSSIANSQSSAGNRDRNMASSDQLVLELSNPELRENALLELSKKREQFQDLAPLLWNSFGTIAALLQEIVSIYPVLSPPNLTPSQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLREDPTTRKWLQQLLHNVGGNRVPALQGGGGFDHLMVN 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00963 324 FunFam Cell differentiation protein RCD1 37 307 - -
Vifa2g00963 324 PANTHER UNCHARACTERIZED 36 308 IPR007216 GO:0006402|GO:0030014
Vifa2g00963 324 SUPERFAMILY ARM repeat 48 279 IPR016024 -
Vifa2g00963 324 Pfam Cell differentiation family, Rcd1-like 46 304 - -
Vifa2g00963 324 Gene3D - 34 305 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00963 Vifa-Chr2 256968795 256976079 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Vifa2g00963 Rcd1 7e-131 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00963 K12606 - gmx:100792784 573.933